Index

_

_get_alert_decision() (built-in function) _get_head_iversion (C++ function) _get_version (C++ function) _init_functions() (built-in function) _init_module() (built-in function)

_make_field_wrapper() (built-in function) _make_input() (built-in function) _make_input_label_str() (built-in function) _make_option() (built-in function) _set_alert_decision() (built-in function)

A

a (Java field) AbstractAccess (Java class) AbstractAccess(T) (Java constructor) AbstractAuthenticator (class in linkahead.connection.authentication.interface) AbstractCache (class in caosadvancedtools.cache) AbstractCaosDBServerResource (Java class) AbstractCFood (class in caosadvancedtools.cfood) AbstractCollectionDatatype (Java class) AbstractDatatype (Java class) AbstractDatatype() (Java constructor) AbstractEntityACLFactory (Java class) AbstractEnumValue (Java class) AbstractEnumValue(EnumElement) (Java constructor) AbstractFileCFood (class in caosadvancedtools.cfood) AbstractObservable (Java class) acceptObserver(Observer) (Java method), [1], [2], [3] access (Java field) Access (Java interface) access() (caosadvancedtools.cfood.FileGuide method) AccessControl (Java class) AccessControlAccess (Java class) AccessControlAccess(AccessControlTransaction) (Java constructor) AccessControlManagementServiceImpl (Java class) AccessControlTransaction (Java class) AccessType (class in linkahead.cached) ACCOUNT_CANNOT_BE_ACTIVATED (Java field) ACCOUNT_CANNOT_BE_RESET (Java field) ACCOUNT_DOES_NOT_EXIST (Java field) ACCOUNT_HAS_BEEN_DELETED (Java field) ACCOUNT_NAME_NOT_UNIQUE (Java field) ACI (class in linkahead.common.models) ACL (class in linkahead.common.models) acl (Java field), [1] (linkahead.common.models.Entity attribute) (linkahead.common.models.QueryTemplate attribute) ACMPermissions (Java class) ACMPermissions(String, String) (Java constructor) acquire() (Java method) acquireReadAccess(TransactionInterface) (Java method) acquireWriteAccess(WriteTransactionInterface) (Java method) ACTIVATOR (Java field) ACTIVE (Java field) add() (caosadvancedtools.datamodel_problems.DataModelProblems static method) (caosadvancedtools.structure_mapping.EntityMapping method) add(byte[]) (Java method) add(ByteBuffer) (Java method) add(char) (Java method) add(char[]) (Java method) add(CharBuffer) (Java method) add(EntityFilterInterface) (Java method) add(EntityID, String) (Java method), [1] add(EntityID, String, String) (Java method) add(IndexedSingleValue) (Java method) add(int) (Java method) add(int, Parent) (Java method) add(int, SingleValue) (Java method) add(int, Value) (Java method) add(Job) (Java method) add(long) (Java method) add(long, int) (Java method) add(Parent) (Java method) add(Property) (Java method) add(SingleValue) (Java method) add(UserSource) (Java method) add(Value) (Java method) add_error() (linkahead.exceptions.TransactionError method) add_field_to_group() (built-in function) add_files() (in module caosadvancedtools.cfood) add_header() (in module caosadvancedtools.pandoc_header_tools) add_help() (built-in function) add_message() (linkahead.common.models.Container method) (linkahead.common.models.Entity method) add_parent() (linkahead.common.models.Entity method) (linkahead.common.models.Property method) (linkahead.common.models.RecordType method) (linkahead.high_level_api.CaosDBPythonEntity method) add_property() (linkahead.common.models.Entity method) (linkahead.common.models.File method) (linkahead.common.models.Property method) (linkahead.common.models.Record method) (linkahead.common.models.RecordType method) add_to_element() (linkahead.common.models.ACI method) add_value_list() (in module caosadvancedtools.scifolder.utils) addAll(Collection) (Java method), [1] addAll(EntityFilterContainer) (Java method) addBenchmark(String, long) (Java method), [1], [2], [3], [4], [5], [6] addError(Message) (Java method), [1], [2], [3], [4], [5] addFile(String, FileProperties) (Java method), [1] addInfo(Message) (Java method), [1], [2] addInfo(String) (Java method), [1], [2] ADDITIONAL_PROPERTY (Java field) addMeasurement(Measurement) (Java method) addMeasurement(Object, long) (Java method), [1] addMeasurement(Object, long, int) (Java method)

addMeasurement(String, long) (Java method) addMessage(ToElementable) (Java method), [1], [2], [3] addParent(Parent) (Java method), [1], [2] addPermissions(EntityInterface, Element) (Java method), [1] addPostShutdownHook(Thread) (Java method) addPreShutdownHook(Runnable) (Java method) addProperty(List) (Java method), [1], [2] addProperty(Property) (Java method), [1], [2] addSelection(Selection) (Java method) addSelections(List) (Java method) addStyleSheet(Document, String) (Java method) addToElement(Element) (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17], [18], [19], [20], [21] addToElement(Element, SerializeFieldStrategy) (Java method), [1], [2], [3] addToElement(EntityInterface, Element, SerializeFieldStrategy) (Java method), [1], [2], [3], [4] addToMap(HashMap) (Java method), [1], [2] addTransactionLog(TransactionLogMessage) (Java method), [1], [2] addWarning(Message) (Java method), [1], [2] ADMINISTRATION (Java field) Affiliation (Java enum) affiliation (linkahead.common.models.Parent property) AFFILIATION_ERROR (Java field) algorithm (Java field) ALL (Java field), [1] all_entities (linkahead.exceptions.TransactionError attribute) all_errors (linkahead.exceptions.TransactionError attribute) all_groups_equal() (caosadvancedtools.cfood.CMeal class method) all_identifying_properties_exist() (caoscrawler.identifiable_adapters.IdentifiableAdapter method) all_required_fields_set() (built-in function) allClasses (Java field) AmbiguousEntityError Analysis (caosadvancedtools.scifolder.withreadme.DataModel attribute) AnalysisCFood (class in caosadvancedtools.scifolder.analysis_cfood) ANONYMOUS_ROLE (Java field) AnonymousAuthenticationToken (Java class) AnonymousRealm (Java class) AnonymousRealm() (Java constructor) ANY_VERSION (Java field) API append() (caosadvancedtools.models.data_model.DataModel method) (linkahead.common.models.Container method) (linkahead.common.models.Messages method) (linkahead.common.models.ParentList method) (linkahead.common.models.PropertyList method) append(Appendable) (Java method) append(FileProperties) (Java method) append(T) (Java method) append(Undoable) (Java method) append_sublist() (in module linkahead.yamlapi) appendJob(Class) (Java method) appendJob(EntityInterface, Class) (Java method) appendMessages(EntityInterface, org.linkahead.api.entity.v1.EntityResponse.Builder) (Java method) appendMessages(EntityInterface, org.linkahead.api.entity.v1.IdResponse.Builder) (Java method) apply(QueryInterface) (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10] apply(QueryInterface, String, String, String) (Java method) apply_list_of_updates() (in module caosadvancedtools.crawler) apply_to_ids() (in module linkahead.apiutils) apply_transformers() (caoscrawler.converters.converters.Converter method) applyBackReference (C++ function) applyIDFilter (C++ function) applyPOV (C++ function) applyQueryTemplates(QueryInterface, String) (Java method) applyTransactionFilter (C++ function) array_schema_from_model_schema() (in module caosadvancedtools.table_json_conversion.xlsx_utils) as (Java field) assert_equal_jsons() (in module caosadvancedtools.tools.test) assertDir(String) (Java method) associateWith(Callable) (Java method) associateWith(Runnable) (Java method) assure_has_description() (in module caosadvancedtools.cfood) assure_has_parent() (in module caosadvancedtools.cfood) assure_has_property() (in module caosadvancedtools.cfood) assure_name_format() (in module caosadvancedtools.table_importer) assure_name_is() (in module caosadvancedtools.cfood) assure_object_is_in_list() (in module caosadvancedtools.cfood) assure_parents_are() (in module caosadvancedtools.cfood) assure_property_is() (in module caosadvancedtools.cfood) assure_special_is() (in module caosadvancedtools.cfood) asyncXslt() (built-in function) Atomic (Java class) ATOMICITY_ERROR (Java field) attach() (caosadvancedtools.cfood.AbstractCFood method) attribute_as_list() (linkahead.high_level_api.CaosDBPythonEntity method) auth_token (linkahead.connection.authentication.interface.AbstractAuthenticator attribute) auth_token_to_cookie() (in module linkahead.connection.utils) authenticate(Request, Response) (Java method) AUTHENTICATION_HEADER (Java field) AuthenticationResource (Java class) AuthenticationUtils (Java class) AuthInterceptor (Java class) AUTHORIZATION_ERROR (Java field) AUTHORIZATION_HEADER (Java field) AuthorizationError authorize(Request, Response) (Java method) AuthTokenAuthenticator (class in linkahead.connection.authentication.auth_token) available() (Java method)

B

b_dividend (Java field) b_divisor (Java field) BackendTransaction (Java class) BackendTransactionImpl (Java interface) Backreference (Java class) Backreference(Query.Pattern, Query.Pattern) (Java constructor) BadQueryError base32Pattern (Java field) BaseTableExporter (class in caosadvancedtools.table_export) BASIC_SCHEME_PREFIX (Java field) belongs_to_meal() (caosadvancedtools.cfood.CMeal method)

bend_references() (in module linkahead.utils.create_revision) binaries (caosadvancedtools.scifolder.withreadme.DataModel attribute) bindSubject() (Java method) block() (Java method) BooleanDatatype (Java class) BooleanElement (class in caoscrawler.structure_elements.structure_elements) BooleanElementConverter (class in caoscrawler.converters.converters) BooleanValue (Java class) braceidpattern (caoscrawler.converters.converters.CrawlerTemplate attribute) buffers (Java field), [1] bytes2UTF8(byte[]) (Java method)

C

c (Java field) Cache (class in caosadvancedtools.cache) (Java class) cache_clear() (in module linkahead.cached) cache_fill() (in module linkahead.cached) cache_form() (built-in function) cache_info() (in module linkahead.cached) cache_initialize() (in module linkahead.cached) CACHE_REGION (Java field) CACHE_REGION_AUTH (Java field) CACHE_REGION_GROUPS (Java field) CACHE_REGION_USER_EXIST (Java field) CACHE_SIZE (linkahead.queries.ClientQueryCache attribute) CacheableBackendTransaction (Java class) CacheableBackendTransaction(ICacheAccess) (Java constructor) cached (linkahead.common.models.Query attribute), [1] cached_get_entity_by() (in module linkahead.cached) cached_query() (in module linkahead.cached) CacheHelper (Java interface) calcChecksum() (Java method) calcChecksum(Object) (Java method) calcChecksum(String) (Java method), [1], [2] calcDifference (C++ function) calcHash(File) (Java method) calcIntersection (C++ function) calcUnion (C++ function) call_script() (in module caosadvancedtools.serverside.generic_analysis) callback() (built-in function) called_from() (Java method) CallerSerializer (Java class) CallResolver (Java class) CallResolver(ServerCall, Metadata, ServerCallHandler) (Java constructor) callScript(Form, List) (Java method) callScript(List, Integer, List) (Java method) callScript(List, Integer, List, Object) (Java method) callScript(String, String[], Object, Map) (Java method) cancel_callback() (built-in function) CANNOT_CONNECT_TO_DATABASE (Java field) CANNOT_CREATE_PARENT_FOLDER (Java field) CANNOT_DELETE_YOURSELF() (Java method) CANNOT_MOVE_FILE_TO_TARGET_PATH (Java field) CANNOT_MOVE_FILE_TO_TMP (Java field) CANNOT_PARSE_BOOL_VALUE (Java field) CANNOT_PARSE_DATETIME_VALUE (Java field) CANNOT_PARSE_DOUBLE_VALUE (Java field) CANNOT_PARSE_ENTITY_ACL (Java field) CANNOT_PARSE_INT_VALUE (Java field) CANNOT_PARSE_UNIT (Java field) CANNOT_PARSE_VALUE (Java field) CANNOT_READ_FILE (Java field) CANNOT_READ_THUMBNAIL (Java field) caosadvancedtools module caosadvancedtools.cache module caosadvancedtools.cfood module caosadvancedtools.cfoods module caosadvancedtools.cfoods.h5 module caosadvancedtools.collect_datamodel module caosadvancedtools.crawler module caosadvancedtools.datainconsistency module caosadvancedtools.datamodel_problems module caosadvancedtools.example_cfood module caosadvancedtools.export_related module caosadvancedtools.guard module caosadvancedtools.import_from_xml module caosadvancedtools.json_schema_exporter module caosadvancedtools.loadFiles module caosadvancedtools.models module caosadvancedtools.models.data_model module caosadvancedtools.models.parser module caosadvancedtools.pandoc_header_tools module caosadvancedtools.read_md_header module caosadvancedtools.scifolder module caosadvancedtools.scifolder.analysis_cfood module caosadvancedtools.scifolder.experiment_cfood module caosadvancedtools.scifolder.generic_pattern module caosadvancedtools.scifolder.publication_cfood module caosadvancedtools.scifolder.result_table_cfood module caosadvancedtools.scifolder.simulation_cfood module caosadvancedtools.scifolder.software_cfood module caosadvancedtools.scifolder.utils module caosadvancedtools.scifolder.withreadme module caosadvancedtools.serverside module caosadvancedtools.serverside.generic_analysis module caosadvancedtools.serverside.helper module caosadvancedtools.serverside.logging module caosadvancedtools.serverside.utils module caosadvancedtools.structure_mapping module caosadvancedtools.suppressKnown module caosadvancedtools.table_converter module caosadvancedtools.table_export module caosadvancedtools.table_importer module caosadvancedtools.table_json_conversion module caosadvancedtools.table_json_conversion.convert module caosadvancedtools.table_json_conversion.export_import_xlsx module caosadvancedtools.table_json_conversion.fill_xlsx module caosadvancedtools.table_json_conversion.table_generator module caosadvancedtools.table_json_conversion.xlsx_utils module caosadvancedtools.tools module caosadvancedtools.tools.strip_null_from_list module caosadvancedtools.tools.test module caosadvancedtools.utils module caosadvancedtools.version module caosadvancedtools.webui_formatter module CaosAuthenticator (Java class) CaosAuthenticator(Context) (Java constructor) CaosAuthorizer (Java class) caoscrawler module caoscrawler.authorize module caoscrawler.config module caoscrawler.converters module caoscrawler.converters.converters module caoscrawler.converters.hdf5_converter module caoscrawler.converters.rocrate module caoscrawler.converters.spss module caoscrawler.converters.transformer_converters module caoscrawler.converters.xml_converter module caoscrawler.converters.zipfile_converter module caoscrawler.crawl module caoscrawler.debug_tree module caoscrawler.exceptions module caoscrawler.identifiable module caoscrawler.identifiable_adapters module caoscrawler.logging module caoscrawler.macros module caoscrawler.macros.macro_yaml_object module caoscrawler.scanner module caoscrawler.scripts module caoscrawler.scripts.generators module caoscrawler.stores module caoscrawler.structure_elements module caoscrawler.structure_elements.rocrate_structure_elements module caoscrawler.structure_elements.structure_elements module caoscrawler.sync_graph module caoscrawler.sync_node module caoscrawler.transformer_functions module caoscrawler.transformers module caoscrawler.transformers.cast_and_parse_transformers module caoscrawler.transformers.string_transformers module caoscrawler.transformers.substitution_transformers module caoscrawler.utils module caoscrawler.validator module caoscrawler.version module CaosDBAuthorizingRealm (Java class) CaosDBAuthorizingRealm() (Java constructor) CaosDBComponent (Java class) CaosDBComponent() (Java constructor) CaosDBConnectionError CaosDBDefaultRealm (Java class) CaosDBDefaultRealm() (Java constructor) CaosDBException (Java class) CaosDBException(String) (Java constructor) CaosDBException(Throwable) (Java constructor) CaosDBHTTPResponse (class in linkahead.connection.interface) CaosDBIdentifiableAdapter (class in caoscrawler.identifiable_adapters) CaosDBMultiProperty (class in linkahead.high_level_api) CaosDBPropertyMetaData (class in linkahead.high_level_api) CaosDBPythonEntity (class in linkahead.high_level_api) CaosDBPythonFile (class in linkahead.high_level_api) CaosDBPythonProperty (class in linkahead.high_level_api) CaosDBPythonRecord (class in linkahead.high_level_api) CaosDBPythonRecordType (class in linkahead.high_level_api) CaosDBPythonUnresolved (class in linkahead.high_level_api) CaosDBPythonUnresolvedParent (class in linkahead.high_level_api) CaosDBPythonUnresolvedReference (class in linkahead.high_level_api) CaosDBRolePermissionResolver (Java class) CaosDBServer (Java class) CaosDBServerConnection (class in linkahead.connection.interface) CaosDBServerConnectorHelper (Java class) CaosDBServerConnectorHelper(Server) (Java constructor) CaosDBSystemOfUnits (Java class) CaosDBToGrpcConverters (Java class) CaosDBToGrpcConverters(TimeZone) (Java constructor) CaosEnum (Java class) CaosEnum(boolean, String) (Java constructor) CaosEnum(String) (Java constructor) CaosPermission (Java class) CaosPermission(HashSet) (Java constructor) CAPITALIZATION_RESET_WARNING(String, String) (Java method) case_sensitive (Java field) cast_to_bool() (in module caoscrawler.transformers.cast_and_parse_transformers) cast_to_float() (in module caoscrawler.transformers.cast_and_parse_transformers) cast_to_int() (in module caoscrawler.transformers.cast_and_parse_transformers) cast_to_str() (in module caoscrawler.transformers.cast_and_parse_transformers) CFood CfoodRequiredVersionError ChainTransaction (Java class) CHECK (Java field) check() (Java method) check_cache() (caosadvancedtools.cache.AbstractCache method) check_cfood_version() (in module caoscrawler.version) check_columns() (caosadvancedtools.table_importer.TableImporter method) check_dataframe() (caosadvancedtools.table_importer.TableImporter method) check_datatype() (caosadvancedtools.table_importer.TableImporter method) check_existing() (caosadvancedtools.cache.IdentifiableCache method) check_form_validity() (built-in function) check_identical() (in module caoscrawler.crawl) check_matches() (caosadvancedtools.crawler.Crawler method) check_missing() (caosadvancedtools.table_importer.TableImporter method) check_record() (caoscrawler.identifiable_adapters.LocalStorageIdentifiableAdapter method) check_reference_field() (in module caosadvancedtools.table_importer) check_referenced_script() (in module caosadvancedtools.serverside.generic_analysis) check_unique() (caosadvancedtools.table_importer.TableImporter method) check_whether_parent_exists() (caoscrawler.crawl.Crawler static method) check_win_path() (in module caosadvancedtools.utils) CheckDatatypePresent (Java class) CheckDependenciesBeforeDeletion (Java class) CheckDescPresent (Java class) CheckEntityACLRoles (Java class) checkEntityExists(EntityID) (Java method) checkExecutionPermission(Subject, String) (Java method) CheckFileStorageConsistency (Java class) CheckNamePresent (Java class)

CheckNoAdditionalPropertiesPresent (Java class) CheckNoOverridesPresent (Java class) CheckParOblPropPresent (Java class) CheckParPresent (Java class) CheckParValid (Java class) checkPasswordStrength(String) (Java method) checkPermission(Permission) (Java method), [1], [2], [3], [4] checkPermission(String) (Java method) checkPermission(Subject, Permission) (Java method), [1], [2], [3] checkPermissions(Collection) (Java method) checkPermissions(EntityInterface, Set) (Java method) checkPermissions(String) (Java method) checkProperty(EntityInterface) (Java method) CheckPropPresent (Java class) CheckPropValid (Java class) CheckQueryTemplate (Java class) CheckRefidIsaParRefid (Java class) CheckRefidPresent (Java class) CheckRefidValid (Java class) checkRole(String) (Java method) checkRoles(Collection) (Java method) checkRoles(String) (Java method) CheckStateTransition (Java class) checksum (Java field) (linkahead.common.models.Entity property) CHECKSUM_TEST_FAILED (Java field) ChecksumUpdater (Java class) checkTarget(EntityInterface, Access, TransactionBenchmark) (Java method) CheckTargetPathValid (Java class) CheckUnitPresent (Java class) CheckValueParsable (Java class) chownScript (Java field) clean_header() (in module caosadvancedtools.pandoc_header_tools) clean_json() (in module linkahead.high_level_api) CLEAN_UP (Java field) CLEANUP (Java field) cleanUp (Java field) cleanup() (caoscrawler.converters.converters.Converter method) (caoscrawler.converters.rocrate.ROCrateConverter method) (caoscrawler.converters.zipfile_converter.ZipFileConverter method) cleanUp() (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17], [18] cleanup() (Java method) cleanUp(boolean) (Java method), [1] cleanupConsumedInfo() (Java method) cleanUpQuery (C++ function) cleanUpTmpDir() (Java method) cleanXML() (in module caosadvancedtools.cache) clear() (Java method), [1] (linkahead.common.models.ACL method) (linkahead.common.models.Permissions method) (linkahead.queries.ClientQueryCache class method) clear_database() (in module linkahead.utils.register_tests) clear_server_messages() (linkahead.common.models.Container method) (linkahead.common.models.Entity method) (linkahead.common.models.Messages method) (linkahead.common.models.QueryTemplate method) clearCache() (Java method) ClientMessage (Java class) ClientMessage(String, String) (Java constructor) ClientQueryCache (class in linkahead.queries) CLIError close() (Java method), [1], [2], [3], [4], [5] (linkahead.connection.encode.ReadableMultiparts method) (linkahead.connection.interface.CaosDBHTTPResponse method) (linkahead.connection.mockup.MockUpResponse method) closeEarly() (Java method) CMeal (class in caosadvancedtools.cfood) COL_TYPE (caosadvancedtools.table_json_conversion.xlsx_utils.RowType attribute) collect_cfoods() (caosadvancedtools.crawler.Crawler method) collect_entities() (caosadvancedtools.models.data_model.DataModel method) collect_existing_structure() (in module caosadvancedtools.structure_mapping) collect_information() (caosadvancedtools.cfood.AbstractCFood method) (caosadvancedtools.cfoods.h5.H5CFood method) (caosadvancedtools.scifolder.analysis_cfood.AnalysisCFood method) (caosadvancedtools.scifolder.experiment_cfood.ExperimentCFood method) (caosadvancedtools.scifolder.publication_cfood.PublicationCFood method) (caosadvancedtools.scifolder.simulation_cfood.SimulationCFood method) (caosadvancedtools.scifolder.software_cfood.SoftwareCFood method) (caosadvancedtools.table_export.BaseTableExporter method) collection (Java field), [1] CollectionDatatypeFactory (Java interface) collectionDatatypeFactory(String) (Java method) collectionDatatypeFactory(String, String, String) (Java method) CollectionValue (Java class) collValues (Java field) ColumnType (class in caosadvancedtools.table_json_conversion.xlsx_utils) combine() (linkahead.common.models.ACL method) combine(EntityACL) (Java method) combine_ignore_files() (in module caosadvancedtools.loadFiles) commit() (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10] compact_entity_list_representation() (caoscrawler.crawl.Crawler static method) compare() (in module caosadvancedtools.collect_datamodel) compare_entities() (in module linkahead.apiutils) compare_workbooks() (in module caosadvancedtools.tools.test) compareTo(ACMPermissions) (Java method) compareTo(EnumElement) (Java method) compareTo(IndexedSingleValue) (Java method) compareTo(Message) (Java method) compile_file_list() (in module caosadvancedtools.loadFiles) Config (Java class) Config() (Java constructor) config_to_yaml() (in module linkahead.configuration) ConfigurationError ConfigurationException (Java class) ConfigurationException(String) (Java constructor) ConfigurationException(String, Throwable) (Java constructor) configure() (in module linkahead.configuration) (linkahead.connection.authentication.auth_token.AuthTokenAuthenticator method), [1] (linkahead.connection.authentication.external_credentials_provider.ExternalCredentialsProvider method) (linkahead.connection.authentication.input.InputCredentialsProvider method), [1] (linkahead.connection.authentication.interface.AbstractAuthenticator method), [1] (linkahead.connection.authentication.interface.CredentialsAuthenticator method), [1] (linkahead.connection.authentication.interface.CredentialsProvider method), [1] (linkahead.connection.authentication.keyring.KeyringCaller method) (linkahead.connection.authentication.pass.PassCaller method) (linkahead.connection.authentication.plain.PlainTextCredentialsProvider method), [1] (linkahead.connection.authentication.unauthenticated.Unauthenticated method), [1] (linkahead.connection.interface.CaosDBServerConnection method) (linkahead.connection.mockup.MockUpServerConnection method) configure_connection() (in module linkahead.connection.connection) configure_server_side_logging() (in module caosadvancedtools.serverside.logging) (in module caoscrawler.logging) Conjunction (Java class) ConnectionException (Java class) ConnectionException(Throwable) (Java constructor) connectionFailed() (Java method) ConsistencyError construct_mapping() (caosadvancedtools.models.parser.SafeLineLoader method) consume() (Java method), [1] consume(OneTimeAuthenticationToken) (Java method) ConsumedInfoCleanupJob (Java class) Container (class in linkahead.common.models) (Java class) ContainerJob (Java class) containsKey(Object) (Java method) containsValue(Object) (Java method) contentless_list_to_none() (in module caoscrawler.transformers.substitution_transformers) convert(Double) (Java method), [1] convert(Entity, EntityInterface) (Java method) convert(EntityInterface) (Java method) convert(EntityRole) (Java method) convert(List) (Java method) convert(long) (Java method) convert(Measurement) (Java method) convert(Message) (Java method) convert(org.caosdb.server.entity.Version) (Java method) convert(org.caosdb.server.entity.wrapper.Parent) (Java method) convert(ParentContainer) (Java method) convert(Property) (Java method) convert(TransactionBenchmark) (Java method) convert_attributes() (in module caoscrawler.converters.hdf5_converter) convert_basic_element() (in module caoscrawler.converters.converters) convert_basic_element_with_nd_array() (in module caoscrawler.converters.hdf5_converter) convert_h5_element() (in module caoscrawler.converters.hdf5_converter) convert_path() (caosadvancedtools.scifolder.withreadme.WithREADME method) convert_record() (in module caoscrawler.validator) convert_size() (in module caosadvancedtools.loadFiles) convert_to_entity() (in module linkahead.high_level_api) convert_to_python_object() (in module linkahead.high_level_api) convert_value() (in module caoscrawler.identifiable_adapters) convert_win_paths() (caosadvancedtools.scifolder.withreadme.WithREADME method) convertACL(EntityInterface) (Java method) convertAcls(List) (Java method) Converter (class in caoscrawler.converters.converters) (Java interface) converter_factory() (caoscrawler.converters.converters.Converter static method) ConverterValidationError convertLikeLocation(String) (Java method) convertProperties(EntityInterface) (Java method) convertScalarValue(Value) (Java method) convertSelectResult(RetrieveContainer) (Java method) convertToArray(long) (Java method) COOKIE_HEADER (Java field) CookieSetter (Java class) CookieSetter(ServerCall, Subject, String) (Java constructor) copy() (caosadvancedtools.table_json_conversion.fill_xlsx.TemplateFiller.Context method) (linkahead.common.models.Entity method) COULD_NOT_CONSTRUCT_STATE_MESSAGE (Java field) COULD_NOT_CONSTRUCT_TRANSITIONS (Java field) COUNT (Java field) (linkahead.queries.QueryType attribute) count() (in module linkahead.queries) Counter (Java class) Counter(int) (Java constructor) countTable(Connection, String) (Java method) CQLParsingErrorListener (Java class) CQLParsingErrorListener(int) (Java constructor) crawl() (caosadvancedtools.crawler.Crawler method) crawl_directory() (caoscrawler.crawl.Crawler method) crawled_data (caoscrawler.crawl.Crawler property) crawled_file (caosadvancedtools.cfood.AbstractFileCFood property) Crawler (class in caosadvancedtools.crawler) (class in caoscrawler.crawl) crawler_main() (in module caoscrawler.crawl) CrawlerTemplate (class in caoscrawler.converters.converters) create() (built-in function), [1] (Java method) create(Collection) (Java method), [1] create(String) (Java method) create_cache() (caosadvancedtools.cache.AbstractCache method) (caosadvancedtools.cache.IdentifiableCache method) (caosadvancedtools.cache.UpdateCache method) (caosadvancedtools.suppressKnown.SuppressKnown method) create_children() (caoscrawler.converters.converters.Converter method) (caoscrawler.converters.converters.CSVTableConverter method) (caoscrawler.converters.converters.DictElementConverter method) (caoscrawler.converters.converters.DirectoryConverter method) (caoscrawler.converters.converters.JSONFileConverter method) (caoscrawler.converters.converters.ListElementConverter method) (caoscrawler.converters.converters.MarkdownFileConverter method) (caoscrawler.converters.converters.SimpleFileConverter method) (caoscrawler.converters.converters.XLSXTableConverter method) (caoscrawler.converters.converters.YAMLFileConverter method) (caoscrawler.converters.hdf5_converter.H5DatasetConverter method) (caoscrawler.converters.hdf5_converter.H5FileConverter method) (caoscrawler.converters.hdf5_converter.H5GroupConverter method) (caoscrawler.converters.hdf5_converter.H5NdarrayConverter method) (caoscrawler.converters.rocrate.ELNFileConverter method) (caoscrawler.converters.rocrate.ROCrateConverter method) (caoscrawler.converters.rocrate.ROCrateEntityConverter method) (caoscrawler.converters.spss.SPSSConverter method) (caoscrawler.converters.transformer_converters.SplitTextConverter method) (caoscrawler.converters.transformer_converters.TransformTextConverter method) (caoscrawler.converters.xml_converter.XMLAttributeNodeConverter method) (caoscrawler.converters.xml_converter.XMLFileConverter method) (caoscrawler.converters.xml_converter.XMLTagConverter method) (caoscrawler.converters.xml_converter.XMLTextNodeConverter method) (caoscrawler.converters.zipfile_converter.ZipFileConverter method) create_children_from_directory() (caoscrawler.converters.converters.DirectoryConverter static method) create_converter_registry() (in module caoscrawler.scanner) create_dummy_file() (in module caosadvancedtools.import_from_xml) create_entity_container() (in module linkahead.high_level_api) create_entity_link() (in module caosadvancedtools.utils) create_entity_summary() (caoscrawler.crawl.Crawler static method) create_files_list() (in module caosadvancedtools.scifolder.utils) create_flat_list() (in module linkahead.apiutils) create_id_query() (in module linkahead.apiutils) create_identifiable_experiment() (caosadvancedtools.scifolder.experiment_cfood.ExperimentCFood static method) create_identifiables() (caosadvancedtools.cfood.AbstractCFood method) (caosadvancedtools.cfood.RowCFood method) (caosadvancedtools.cfoods.h5.H5CFood method) (caosadvancedtools.example_cfood.ExampleCFood method) (caosadvancedtools.scifolder.analysis_cfood.AnalysisCFood method) (caosadvancedtools.scifolder.experiment_cfood.ExperimentCFood method) (caosadvancedtools.scifolder.publication_cfood.PublicationCFood method) (caosadvancedtools.scifolder.result_table_cfood.ResultTableCFood method) (caosadvancedtools.scifolder.simulation_cfood.SimulationCFood method) (caosadvancedtools.scifolder.software_cfood.SoftwareCFood method) create_path_value() (in module caoscrawler.converters.converters) create_property_query() (caoscrawler.identifiable_adapters.IdentifiableAdapter static method) create_query_for_identifiable() (caosadvancedtools.crawler.Crawler static method) (caoscrawler.identifiable_adapters.IdentifiableAdapter static method) create_re_for_file_list() (in module caosadvancedtools.loadFiles) create_record() (in module linkahead.high_level_api) create_records() (caoscrawler.converters.converters.Converter method) (caoscrawler.converters.converters.PropertiesFromDictConverter method) (caoscrawler.converters.hdf5_converter.H5NdarrayConverter method) (in module caoscrawler.converters.converters) create_revision() (in module linkahead.utils.create_revision) create_scoped_copy() (caoscrawler.stores.Store method) create_state_acl() (linkahead.common.state.State static method) create_structure() (caosadvancedtools.cfoods.h5.H5CFood class method) create_transformer_registry() (in module caoscrawler.scanner) create_values() (caoscrawler.converters.converters.Converter method) (caoscrawler.converters.converters.DirectoryConverter method) (caoscrawler.converters.converters.SimpleFileConverter method) createBenchmark(Class) (Java method) createBenchmark(String) (Java method) createClientInfo() (Java method) createDataType(AbstractDatatype) (Java method), [1] createdTimestamp (Java field) createErrorNotification() (built-in function) createFolders(File) (Java method) createIDIntersectionStmt (C++ function) createInboundRoot() (Java method) createPOVSelectStatement (C++ function) createSessionTimeoutCookie(SessionToken) (Java method) createSessionTokenCookie(SelfValidatingAuthenticationToken) (Java method) createSharedDir() (Java method) createSingleRole(CreateSingleRoleRequest, StreamObserver) (Java method) createSingleUser(CreateSingleUserRequest, StreamObserver) (Java method) createState(ClientMessage) (Java method) createState(Property) (Java method) createStateProperty() (Java method) createSymlink(File, File) (Java method) createTmpHomeDir() (Java method) createTmpTable (C++ function) createWaitingNotification() (built-in function) createWorkingDir() (Java method) CredentialsAuthenticator (class in linkahead.connection.authentication.interface) CredentialsProvider (class in linkahead.connection.authentication.interface) CredentialsValidator (Java interface) CronJob (Java class) CronJob(String, Runnable, int) (Java constructor) CronJob(String, Runnable, int, boolean) (Java constructor) csv_to_datamodel() (in module caoscrawler.scripts.generators) csv_to_datamodel_main() (in module caoscrawler.scripts.generators) CSVImporter (class in caosadvancedtools.table_importer) CSVTableConverter (class in caoscrawler.converters.converters) cuid (linkahead.common.models.Entity property) CustomConfigurationFactory (Java class)

D

Data Model DATA_TYPE_DOES_NOT_ACCEPT_COLLECTION_VALUES (Java field) DATA_TYPE_NAME_DUPLICATES (Java field) Database (Java class) DatabaseAccessManager (Java class) DatabaseConnectionPool (Java class) DatabaseUtils (Java class) DataInconsistencyError DataModel (class in caosadvancedtools.models.data_model) (class in caosadvancedtools.scifolder.withreadme) DataModelError DataModelProblems (class in caosadvancedtools.datamodel_problems) DataType (Java field) datatype (linkahead.common.models.Entity property) (linkahead.high_level_api.CaosDBPropertyMetaData attribute) DATATYPE_CHANGED_EVENT (Java field) datatype_id (Java field) DATATYPE_INHERITANCE_AMBIGUOUS (Java field) datatype_name (Java field) DatatypeDefinition (Java annotation) datatypeFactory(EntityID) (Java method) datatypeFactory(EntityID, String) (Java method) datatypeFactory(String) (Java method) date (caosadvancedtools.scifolder.withreadme.DataModel attribute) Date (Java class) date (Java field) (linkahead.common.versioning.Version attribute) Date(Integer, Integer, Integer, TimeZone) (Java constructor) date_converter() (in module caosadvancedtools.table_importer) date_data (Java field) date_parse() (in module caoscrawler.transformers.cast_and_parse_transformers) DateElementConverter (class in caoscrawler.converters.converters) datetime_converter() (in module caosadvancedtools.table_importer) datetime_data (Java field) datetime_parse() (in module caoscrawler.transformers.cast_and_parse_transformers) DateTimeDatatype (Java class) DatetimeElementConverter (class in caoscrawler.converters.converters) DateTimeFactory2 (Java class) DateTimeFactory2() (Java constructor) DateTimeFactory2(TimeZone) (Java constructor) DateTimeFactoryInterface (Java interface) DateTimeInterface (Java interface) DateTimeStringStrategy (Java interface) DBHelper (Java interface) debug (linkahead.common.models.Info property) debug_build_usage_tree() (caoscrawler.crawl.Crawler static method) debug_matching() (caoscrawler.converters.converters.Converter static method) DebugCalls (Java class) DebugTree (class in caoscrawler.debug_tree) deep_record_from_json() (in module caosadvancedtools.table_json_conversion.convert) DEFAULT_BUILD_NUMBER_FILE (Java field) DEFAULT_DOMAIN (Java field) DEFAULT_INDEX (Java field) DEFAULT_LENGTH (Java field) default_matches (caoscrawler.converters.converters.BooleanElementConverter attribute) (caoscrawler.converters.converters.FloatElementConverter attribute) (caoscrawler.converters.converters.IntegerElementConverter attribute) (caoscrawler.converters.converters.TextElementConverter attribute) DEFAULT_MAX_REPLAYS (Java field) DEFAULT_PAM_SCRIPT (Java field) DEFAULT_REPLAYS_TIMEOUT_MS (Java field) DEFAULT_ROUTE (Java field) DEFAULT_SIZE (linkahead.queries.ClientQueryCache attribute) DEFAULT_TIMEOUT_MS (Java field) DEFAULT_WEBUI_PUBLIC (Java field) defaultIfNull(T, T) (Java method) DefaultPamScriptCaller (Java class) DefaultPamScriptCaller(String) (Java constructor) DefaultResource (Java class) DefaultResource() (Java constructor) DefaultResource(Element) (Java constructor) defineParser() (in module caosadvancedtools.export_related) (in module caosadvancedtools.import_from_xml) definition (caoscrawler.macros.macro_yaml_object.MacroDefinition attribute) defmacro_constructor() (in module caoscrawler.macros.macro_yaml_object) DELETE (Java field), [1] delete() (in module linkahead.common.models) (linkahead.common.models.Container method) (linkahead.common.models.Entity method) (linkahead.common.models.QueryTemplate method) delete(File) (Java method) delete(File, boolean) (Java method) delete(String) (Java method), [1] DELETED (Java field) DeleteEntity (Java class) DeleteEntity(EntityID) (Java constructor) DeleteEntity(EntityID, String) (Java constructor) deleteEntityProperties (C++ function) DeleteEntityProperties (Java class) DeleteEntityProperties(EntityInterface) (Java constructor) DeleteEntityPropertiesImpl (Java interface) DeleteEntityTransaction (Java class) DeleteEntityTransaction(TransactionContainer) (Java constructor)

DeleteFile (Java class) deleteFile() (Java method) DeleteFile(EntityInterface) (Java constructor) deleteIsa (C++ function) DeletePassword (Java class) DeletePassword(String) (Java constructor) DeletePasswordImpl (Java interface) DeleteRole (Java class) DeleteRole(String) (Java constructor) DeleteRoleImpl (Java interface) DeleteRoleTransaction (Java class) DeleteRoleTransaction(String) (Java constructor) deleteSingleRole(DeleteSingleRoleRequest, StreamObserver) (Java method) deleteSingleUser(DeleteSingleUserRequest, StreamObserver) (Java method) DeleteSparseEntity (Java class) DeleteSparseEntity(EntityInterface) (Java constructor) DeleteSparseEntityImpl (Java interface) DeleteUser (Java class) DeleteUser(String, String) (Java constructor) DeleteUserImpl (Java interface) DeleteUserTransaction (Java class) DeleteUserTransaction(String) (Java constructor) DeleteUserTransaction(String, String) (Java constructor) deleteWorkingDir(File) (Java method) deliver() (Java method) deny() (linkahead.common.models.ACL method) (linkahead.common.models.Entity method) deny(ResponsibleAgent, boolean, Collection) (Java method) deny(ResponsibleAgent, boolean, EntityPermission) (Java method) deny(ResponsibleAgent, boolean, int) (Java method) deny(ResponsibleAgent, boolean, String) (Java method) deny(ResponsibleAgent, int) (Java method) deny(ResponsibleAgent, String) (Java method) deriveStage1Inserts(List, EntityInterface) (Java method) deriveStage2Inserts(List, List, Deque, EntityInterface) (Java method) deriveUpdate(EntityInterface, EntityInterface) (Java method) desc (Java field), [1] describe_diff() (in module linkahead.apiutils) description (caosadvancedtools.scifolder.withreadme.DataModel attribute) DESCRIPTION (Java field) description (Java field), [1], [2], [3] (linkahead.common.models.Entity property) (linkahead.common.state.State property) (linkahead.common.state.Transition property) (linkahead.exceptions.EntityError property) (linkahead.high_level_api.CaosDBPropertyMetaData attribute) (linkahead.high_level_api.CaosDBPythonEntity property) deserialize() (linkahead.high_level_api.CaosDBPythonEntity static method) deserialize(String) (Java method) Dict (class in caoscrawler.structure_elements.structure_elements) dict_to_xml() (in module linkahead.yamlapi) DictBooleanElement (class in caoscrawler.structure_elements.structure_elements) DictBooleanElementConverter (class in caoscrawler.converters.converters) DictConverter (class in caoscrawler.converters.converters) DictDictElement (class in caoscrawler.structure_elements.structure_elements) DictDictElementConverter (class in caoscrawler.converters.converters) DictElement (class in caoscrawler.structure_elements.structure_elements) DictElementConverter (class in caoscrawler.converters.converters) DictFloatElement (class in caoscrawler.structure_elements.structure_elements) DictFloatElementConverter (class in caoscrawler.converters.converters) DictIntegerElement (class in caoscrawler.structure_elements.structure_elements) DictIntegerElementConverter (class in caoscrawler.converters.converters) DictListElement (class in caoscrawler.structure_elements.structure_elements) DictListElementConverter (class in caoscrawler.converters.converters) DictTextElement (class in caoscrawler.structure_elements.structure_elements) DictTextElementConverter (class in caoscrawler.converters.converters) Directory (class in caoscrawler.structure_elements.structure_elements) DirectoryConverter (class in caoscrawler.converters.converters) disable_fields() (built-in function) disable_group() (built-in function) disable_name() (built-in function) Disjunction (Java class) dismiss_form() (built-in function) display_name (linkahead.common.timezone.TimeZone attribute) document2String(Document) (Java method) doGetAuthenticationInfo(AuthenticationToken) (Java method), [1], [2], [3] doGetAuthorizationInfo(PrincipalCollection) (Java method) doInit() (Java method), [1], [2], [3] dom (Java field) DomainToElementStrategy (Java class) DomainToElementStrategy() (Java constructor) doRelease() (Java method) double_data (Java field) DoubleDatatype (Java class) download() (linkahead.common.models.File method) (linkahead.high_level_api.CaosDBPythonFile method) download_from_path() (linkahead.common.models.File static method) DownloadBuffer (Java class) DownloadBuffer(FileProperties) (Java constructor) downloadNextChunk(FileTransmissionId) (Java method) downloadTSV() (built-in function) downloadXLS() (built-in function) DUMMY_CACHE (linkahead.queries.ClientQueryCache attribute)

E

EDIT_ACL (Java field) EDIT_PRIORITY_ACL (Java field) EID (linkahead.cached.AccessType attribute) element2String(Element) (Java method) ELNFileConverter (class in caoscrawler.converters.rocrate) email (Java field) EMAIL_NOT_WELL_FORMED (Java field) EMAIL_PATTERN (Java field) empty_diff() (in module linkahead.apiutils) emptyEntity() (Java method) EmptySchemaException EmptyUniqueQueryError enable_fields() (built-in function) enable_group() (built-in function) enable_name() (built-in function) encode() (linkahead.connection.encode.MultipartParam method) encode_and_quote() (in module linkahead.connection.encode) encode_file_header() (in module linkahead.connection.encode) encode_hdr() (linkahead.connection.encode.MultipartParam method) encode_string() (in module linkahead.connection.encode) endIndex (Java field) entities (linkahead.exceptions.TransactionError attribute) entities_without() (caosadvancedtools.models.data_model.DataModel static method) Entity (class in linkahead.common.models) (Java class) ENTITY (Java field) entity (Java field), [1] (linkahead.exceptions.EntityError attribute) Entity() (Java constructor) Entity(Element) (Java constructor) Entity(Element, Role) (Java constructor) Entity(EntityID) (Java constructor) Entity(EntityID, Role) (Java constructor) Entity(String) (Java constructor) Entity(String, Role) (Java constructor) ENTITY_DOES_NOT_EXIST (Java field) ENTITY_HAS_BEEN_DELETED_SUCCESSFULLY (Java field) ENTITY_HAS_NO_DESCRIPTION (Java field) ENTITY_HAS_NO_ID (Java field) ENTITY_HAS_NO_NAME (Java field) ENTITY_HAS_NO_NAME_OR_ID (Java field) ENTITY_HAS_NO_PARENTS (Java field) ENTITY_HAS_NO_PROPERTIES (Java field) ENTITY_HAS_UNQUALIFIED_PARENTS (Java field) ENTITY_HAS_UNQUALIFIED_PROPERTIES (Java field) ENTITY_HAS_UNQUALIFIED_REFERENCE (Java field) ENTITY_IS_EMPTY (Java field) ENTITY_NAME_DUPLICATES (Java field) ENTITY_NAME_IS_NOT_UNIQUE (Java field) ENTITY_ROLE_PARAMETER (Java field) ENTITY_STATE_ROLE_MARKER (Java field) ENTITY_STATUS_CHANGED_EVENT (Java field) EntityACI (Java class) EntityACI(ResponsibleAgent, long) (Java constructor) EntityACL (Java class) EntityACL(Collection) (Java constructor) EntityACL(EntityACI) (Java constructor) EntityACLFactory (Java class) EntityByIdContainer (Java class) EntityByIdContainer(Subject, Long, String, HashMap) (Java constructor) EntityDoesNotExistError EntityDoesNotExistException (Java class) EntityDoesNotExistException() (Java constructor) EntityError EntityFilterContainer (Java class) EntityFilterInterface (Java interface) EntityHasNoAclError EntityHasNoDatatypeError EntityID (Java class) EntityID() (Java constructor) EntityID(String) (Java constructor) EntityIdRegistry (Java class) EntityIdRegistry(EntityIdRegistryStrategy) (Java constructor) EntityIdRegistry(String, Transaction) (Java constructor) EntityIdRegistry(Transaction) (Java constructor) EntityIdRegistryStrategy (Java class) EntityIdRegistryStrategy(Transaction) (Java constructor) EntityInterface (Java interface) EntityJob (Java class) EntityMapping (class in caosadvancedtools.structure_mapping) EntityMergeConflictError EntityNamesResource (Java class) EntityOwnerResource (Java class) EntityPermission (Java class) EntityPermissionsResource (Java class) EntityResource (Java class) EntityStateJob (Java class)

EntityStatus (Java enum) EntityToElementStrategy (Java class) EntityToElementStrategy(String) (Java constructor) EntityTransactionInterface (Java interface) EntityTransactionServiceImpl (Java class) EntityTransactionServiceImpl(FileTransmissionServiceImpl) (Java constructor) EntityWasNotUniqueException (Java class) EntityWasNotUniqueException() (Java constructor) EntityWrapper (Java class) EntityWrapper(EntityInterface) (Java constructor) entrySet() (Java method) enum_data (Java field) EnumElement (Java class) EnumElement(int, String) (Java constructor) eq_currentTransactor() (Java method) eq_foreignTransactor(Query.Pattern) (Java method) eq_foreignTransactor(String) (Java method) equals(Object) (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17], [18], [19], [20], [21], [22], [23], [24], [25] equals(Value) (Java method), [1], [2], [3], [4], [5], [6], [7] equals_with_casting() (in module caosadvancedtools.tools.test) ERROR (Java field) Error (Java field) error(Message) (Java method) error(Message, Status) (Java method) error(Representation, Status) (Java method) error(Status) (Java method) ERROR_INTEGRITY_VIOLATION (Java field) errors (linkahead.exceptions.TransactionError attribute) escape_dquoted_text() (in module linkahead.utils.escape) escape_quoted_text() (in module linkahead.utils.escape) escape_squoted_text() (in module linkahead.utils.escape) escape_xml_representation() (in module caosadvancedtools.serverside.utils) evaluate_exception() (caosadvancedtools.datamodel_problems.DataModelProblems static method) ex_null_p (Java field) ExampleCFood (class in caosadvancedtools.example_cfood) exclusiveUpperBound (Java field) execute() (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17], [18], [19], [20], [21], [22], [23], [24], [25], [26], [27], [28], [29], [30], [31], [32], [33], [34], [35], [36], [37], [38], [39], [40], [41], [42], [43], [44], [45], [46], [47], [48], [49], [50], [51], [52], [53], [54], [55], [56], [57], [58], [59], [60], [61], [62], [63], [64], [65] (linkahead.common.models.Query method) execute(Callable) (Java method) execute(EntityID) (Java method), [1], [2], [3], [4], [5], [6], [7] execute(EntityID, EntityID) (Java method), [1], [2], [3] execute(EntityID, Long) (Java method), [1] execute(EntityID, String) (Java method), [1], [2], [3], [4], [5] execute(EntityID, String, boolean) (Java method), [1] execute(EntityInterface) (Java method), [1] execute(JobExecutionContext) (Java method), [1] execute(K) (Java method), [1] execute(K, Access) (Java method) execute(LinCon) (Java method), [1] execute(long, String) (Java method), [1] execute(Principal) (Java method), [1] execute(ProtoInfo) (Java method), [1] execute(ProtoUser) (Java method), [1] execute(Runnable) (Java method) execute(SparseEntity) (Java method), [1], [2], [3], [4], [5] execute(String) (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13] execute(String, Hasher, String) (Java method), [1] execute(String, Long) (Java method), [1] execute(String, long) (Java method), [1] execute(String, String) (Java method), [1], [2], [3] execute(String, String, String) (Java method), [1] execute(String, String, String, long, int, EntityID) (Java method), [1] execute_inserts_in_list() (caoscrawler.crawl.Crawler static method) execute_parent_updates_in_list() (caoscrawler.crawl.Crawler static method) execute_query() (in module linkahead.common.models) execute_updates_in_list() (caoscrawler.crawl.Crawler static method) executeNoCache() (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9] ExecuteQuery (Java class) executeQueryInBackend(Access) (Java method) executeTransaction() (Java method) exhaust() (Java method) existing_instances (caosadvancedtools.cfood.CMeal attribute) exitValue() (Java method) Experiment (caosadvancedtools.scifolder.withreadme.DataModel attribute) ExperimentCFood (class in caosadvancedtools.scifolder.experiment_cfood) EXPIRED_SESSION_COOKIE (Java field) expiredSessionMetadata() (Java method) export() (in module caosadvancedtools.export_related) export_container_to_xlsx() (in module caosadvancedtools.table_json_conversion.export_import_xlsx) export_entity() (caoscrawler.sync_node.SyncNode method) export_record_lists() (caoscrawler.sync_graph.SyncGraph method) export_related_to() (in module caosadvancedtools.export_related) ext_bookmarks() (built-in function) extend() (caosadvancedtools.models.data_model.DataModel method) (linkahead.common.models.Container method) (linkahead.common.models.ParentList method) (linkahead.common.models.PropertyList method) ExternalCredentialsProvider (class in linkahead.connection.authentication.external_credentials_provider)

F

field_ready() (built-in function) File (class in caoscrawler.structure_elements.structure_elements) (class in linkahead.common.models) FILE (Java field) File (Java field) file (linkahead.common.models.Entity property) (linkahead.high_level_api.CaosDBPythonEntity property) FILE_DOES_NOT_EXIST (Java field), [1] FILE_HAS_NO_TARGET_PATH (Java field) FILE_HAS_NOT_BEEN_UPLOAED (Java field) FILE_MODIFIED (Java field) FILE_NOT_FOUND (Java field) FILE_NOT_IN_DROPOFFBOX (Java field) FILE_UPLOAD_FAILED (Java field) FILE_WAS_MODIFIED (Java field) fileChecked (Java field) FileCheckHash (Java interface) FileCheckSize (Java interface) FileConsistencyCheck (Java class) FileConsistencyCheck(String, long, String, Long, Hasher) (Java constructor) FileConverter (class in caoscrawler.converters.converters) FileCrawler (class in caosadvancedtools.crawler) FileDatatype (Java class) FileDownload (Java class) fileDownload(FileDownloadRequest, StreamObserver) (Java method) FileDownload(FileTransmissionSettings, String) (Java constructor) FileDownloadRegistration (Java class) fileDownloadRegistration (Java field) FileExists (Java interface) FileGuide (class in caosadvancedtools.cfood) fileHash (Java field) FileNameIterator (Java class) FileNameIterator(File, String) (Java constructor) filePath (Java field) FileProperties (Java class) FileProperties(String, String, Long) (Java constructor) FileProperties(String, String, Long, String) (Java constructor) filesCount (Java field) fileSize (Java field) FilesJob (Java class) FileStorageConsistencyCheck (Java class) FileStorageConsistencyCheck(String) (Java constructor) FileSystem (Java class) FileSystemResource (Java class) FileSystemStructureElement (class in caoscrawler.structure_elements.structure_elements) FileToElementStrategy (Java class) FileToElementStrategy() (Java constructor) FileTransmission (Java class) FileTransmission(String) (Java constructor) FileTransmissionServiceImpl (Java class) FileTransmissionServiceImpl() (Java constructor) FileUpload (Java class) fileUpload(StreamObserver) (Java method) FileUpload(String) (Java constructor) FileUploadRegistration (Java class) fileUploadRegistration (Java field) FileUploadStreamObserver (Java class) FileUploadStreamObserver(StreamObserver) (Java constructor) FileUtils (Java class) FileWasModifiedAfter (Java interface)

fill() (linkahead.queries.ClientQueryCache class method) fill_data() (caosadvancedtools.table_json_conversion.fill_xlsx.TemplateFiller method) fill_from_data() (caosadvancedtools.table_json_conversion.fill_xlsx.TemplateFiller.Context method) fill_template() (in module caosadvancedtools.table_json_conversion.fill_xlsx) filter() (caosadvancedtools.suppressKnown.SuppressKnown method) (linkahead.common.models.ParentList method) (linkahead.common.models.PropertyList method) filter_by_identity() (linkahead.common.models.Container method) (linkahead.common.models.ParentList method) (linkahead.common.models.PropertyList method) filter_children() (caoscrawler.converters.converters.Converter method) filterIntermediateResult(String) (Java method) FINAL_STATE_PROPERTY_NAME (Java field) FIND (Java field) (linkahead.queries.QueryType attribute) find() (in module linkahead.queries) find_existing() (caosadvancedtools.crawler.Crawler static method) find_or_insert_identifiables() (caosadvancedtools.crawler.Crawler static method) find_paginated() (in module linkahead.queries) find_records_that_reference_ids() (in module caosadvancedtools.utils) find_referenced_files() (caosadvancedtools.scifolder.withreadme.WithREADME method) findStateModel(EntityInterface) (Java method) FIX (Java field), [1] FlagInfo (Java class) FlagJob (Java class) flags (linkahead.common.models.Entity property) (linkahead.common.models.Query attribute), [1] FlatProperty (Java class) FloatElement (class in caoscrawler.structure_elements.structure_elements) FloatElementConverter (class in caoscrawler.converters.converters) flush() (Java method) folder_to_type() (in module caosadvancedtools.scifolder.publication_cfood) ForbiddenTransaction, [1] force_to_bool() (in module caoscrawler.transformers.cast_and_parse_transformers) FOREIGN (caosadvancedtools.table_json_conversion.xlsx_utils.ColumnType attribute) ForeignError form2CommandLine(Form) (Java method) FORM_CONTAINS_UNSUPPORTED_CONTENT (Java field) form_to_object() (built-in function) format() (caosadvancedtools.webui_formatter.WebUI_Formatter method) format(Mail) (Java method), [1] forProperty(EntityInterface) (Java method) forProperty(String) (Java method) FragmentDateTime (Java class) FragmentDateTime(Integer, Integer, Integer, Integer, Integer, Integer, Integer, TimeZone) (Java constructor) from_file() (linkahead.connection.encode.MultipartParam class method) from_params() (linkahead.connection.encode.MultipartParam class method) from_query() (linkahead.queries.QueryType class method) from_state (linkahead.common.state.Transition property) FROM_STATE_PROPERTY_NAME (Java field) from_table() (in module caosadvancedtools.table_converter) from_tsv() (in module caosadvancedtools.table_converter) from_xml() (linkahead.common.models.Container static method) (linkahead.common.models.Info static method) (linkahead.common.state.State static method) (linkahead.common.state.Transition static method) (linkahead.common.versioning.Version static method) FROM_XML_TAG (Java field) fromJSON(String) (Java method) fromXML(Element) (Java method) fssize (Java field)

G

gen_boundary() (in module linkahead.connection.encode) GeneralInfoServiceImpl (Java class) GeneralStore (class in caoscrawler.stores) generate() (caosadvancedtools.table_json_conversion.table_generator.TableTemplateGenerator method) (caosadvancedtools.table_json_conversion.table_generator.XLSXTemplateGenerator method) (Java method), [1], [2], [3] generate(Config) (Java method) generate(Config, Principal) (Java method) generate(Subject) (Java method) generate_password() (in module linkahead.common.administration) generate_property_name() (in module caosadvancedtools.table_converter) generate_run_id() (caoscrawler.crawl.Crawler method) generateAuthToken(String) (Java method) GenerateEntityId (Java class) generateForPurpose(String, Subject) (Java method) generateId() (Java method), [1], [2] generateRootElement() (Java method) generateRootElement(Element) (Java method) generateRootElement(ServerSideScriptingCaller) (Java method) GENERIC_ACM_PERMISSION (Java field) GENERIC_ROLE_PERMISSION (Java field) GENERIC_USER_PERMISSION (Java field) GenericValue (Java class) GenericValue(Double) (Java constructor) GenericValue(Integer) (Java constructor) GenericValue(long) (Java constructor) GenericValue(String) (Java constructor) get() (caosadvancedtools.cache.UpdateCache method) (linkahead.common.models.Messages method) get(Object) (Java method) get_acl_for_role() (linkahead.common.models.ACL method) get_acl_for_user() (linkahead.common.models.ACL method) get_all_errors() (linkahead.common.models.Container method) get_all_messages() (linkahead.common.models.Container method) (linkahead.common.models.Entity method) get_argument_parser() (in module caosadvancedtools.serverside.helper) get_authentication_provider() (in module linkahead.connection.authentication.auth_token) (in module linkahead.connection.authentication.input) (in module linkahead.connection.authentication.keyring) (in module linkahead.connection.authentication.pass) (in module linkahead.connection.authentication.plain) (in module linkahead.connection.authentication.unauthenticated) get_body_size() (in module linkahead.connection.encode) get_branch_in() (in module linkahead.utils.git_utils) get_by_name() (linkahead.common.models.PropertyList method) get_by_name_and_role() (in module caoscrawler.utils) get_cache_key() (built-in function) get_cache_schema_version() (caosadvancedtools.cache.AbstractCache method) (caosadvancedtools.cache.IdentifiableCache method) (caosadvancedtools.cache.UpdateCache method) get_cache_value() (built-in function) get_cache_version() (caosadvancedtools.cache.AbstractCache method) get_caoscrawler_version() (in module caoscrawler.version) get_children_of_rt() (in module caoscrawler.identifiable_adapters) get_code() (linkahead.common.models.Message method) get_column_type_row_index() (in module caosadvancedtools.table_json_conversion.xlsx_utils) get_commit_in() (in module linkahead.utils.git_utils) get_config() (in module linkahead.configuration) get_config_setting() (in module caoscrawler.config) get_connection() (in module linkahead.connection.connection) get_data() (in module caosadvancedtools.serverside.helper) get_data_columns() (in module caosadvancedtools.table_json_conversion.xlsx_utils) get_deep() (caosadvancedtools.models.data_model.DataModel method) get_default_file_name() (caosadvancedtools.cache.AbstractCache method) (caosadvancedtools.cache.IdentifiableCache method) (caosadvancedtools.cache.UpdateCache method) get_defining_paths() (in module caosadvancedtools.table_json_conversion.xlsx_utils) get_description() (in module caosadvancedtools.scifolder.withreadme) (in module linkahead.utils.plantuml) get_dict_copied() (caoscrawler.stores.Store method) get_diff_in() (in module linkahead.utils.git_utils) get_dividend() (Java method), [1] get_divisor() (Java method), [1] get_dm() (in module caosadvancedtools.collect_datamodel) get_enabled_fields() (built-in function) get_enabled_required_fields() (built-in function) get_entity() (in module caosadvancedtools.cfood) get_entity_by() (in module linkahead.queries) get_entity_by_id() (in module linkahead.utils.get_entity) (linkahead.common.models.Container method) get_entity_by_name() (in module linkahead.utils.get_entity) (linkahead.common.models.Container method) get_entity_by_path() (in module linkahead.utils.get_entity) get_entity_for_path() (in module caosadvancedtools.cfood) get_entity_ids_from_include_file() (in module caosadvancedtools.scifolder.utils) get_equivalent() (caoscrawler.sync_graph.SyncGraph method) get_error_str() (caosadvancedtools.table_json_conversion.convert.XLSXConverter method) get_errors() (caosadvancedtools.table_json_conversion.convert.XLSXConverter method) (linkahead.common.models.Container method) (linkahead.common.models.Entity method) (linkahead.common.models.QueryTemplate method) get_errors_deep() (linkahead.common.models.Entity method) get_existing_entities() (caosadvancedtools.models.data_model.DataModel static method) get_fields() (built-in function) get_file() (caoscrawler.identifiable_adapters.CaosDBIdentifiableAdapter method) (caoscrawler.identifiable_adapters.IdentifiableAdapter method) (caoscrawler.identifiable_adapters.LocalStorageIdentifiableAdapter method) get_file_via_download() (in module caosadvancedtools.serverside.helper) get_files_referenced_by_field() (in module caosadvancedtools.scifolder.utils) get_foreign_key_columns() (in module caosadvancedtools.table_json_conversion.xlsx_utils) get_glob() (in module caosadvancedtools.scifolder.withreadme) get_global_acl() (in module linkahead.common.models) get_group_fields() (built-in function) get_head_relative (C++ function) get_head_version (C++ function) get_header() (in module caosadvancedtools.pandoc_header_tools) (in module caosadvancedtools.read_md_header) get_headers() (in module linkahead.connection.encode) get_history() (linkahead.common.versioning.Version method) get_history_tsv() (built-in function) get_id_from_versionid() (in module linkahead.common.models) get_id_of_datatype() (in module linkahead.common.datatype) get_identifiable() (caoscrawler.identifiable_adapters.IdentifiableAdapter method) get_identifying_referenced_entities() (caoscrawler.identifiable_adapters.IdentifiableAdapter static method) get_ids_for_entities_with_names() (in module caosadvancedtools.cfood) get_ids_of_related_entities() (in module caosadvancedtools.export_related) get_importance() (linkahead.common.models.Entity method) (linkahead.common.models.PropertyList method) get_inserts() (caosadvancedtools.cache.UpdateCache method) get_internal_id() (caoscrawler.stores.Store method) get_iversion (C++ function) get_known_permissions() (in module linkahead.common.models) get_list_datatype() (in module linkahead.common.datatype) get_messages() (linkahead.common.models.Entity method) (linkahead.common.models.QueryTemplate method) get_name() (caoscrawler.structure_elements.structure_elements.StructureElement method) get_names_current_scope() (caoscrawler.stores.RecordStore method) get_offset_a() (Java method), [1] get_offset_c() (Java method), [1] get_options() (caoscrawler.converters.converters.CSVTableConverter method) (caoscrawler.converters.converters.TableConverter method) (caoscrawler.converters.converters.XLSXTableConverter method) get_origin_url_in() (in module linkahead.utils.git_utils) get_parent() (linkahead.common.models.Entity method) get_parents() (linkahead.common.models.Entity method) (linkahead.common.models.QueryTemplate method) (linkahead.high_level_api.CaosDBPythonEntity method) (linkahead.utils.plantuml.Grouped method) get_parents_recursively() (linkahead.common.models.Entity method) get_parser() (in module caosadvancedtools.collect_datamodel) get_path_position() (in module caosadvancedtools.table_json_conversion.xlsx_utils) get_path_rows() (in module caosadvancedtools.table_json_conversion.xlsx_utils) get_permissions_for_role() (linkahead.common.models.ACL method) get_permissions_for_user() (linkahead.common.models.ACL method) get_pretty_xml() (in module caosadvancedtools.cache) get_previous_version() (caosadvancedtools.cache.UpdateCache static method) get_primary_parent_version (C++ function) get_properties() (linkahead.common.models.Entity method) (linkahead.common.models.QueryTemplate method) (linkahead.high_level_api.CaosDBPythonEntity method) get_property() (in module caosadvancedtools.cfood) (linkahead.common.models.Entity method) (linkahead.high_level_api.CaosDBPythonEntity method) get_property_metadata() (linkahead.high_level_api.CaosDBPythonEntity method) get_property_values() (linkahead.common.models.Container method) (linkahead.common.models.Entity method) get_re() (caosadvancedtools.cfood.AbstractFileCFood class method) (caosadvancedtools.cfood.CMeal static method) (caosadvancedtools.cfoods.h5.H5CFood static method) (caosadvancedtools.example_cfood.ExampleCFood class method) (caosadvancedtools.scifolder.analysis_cfood.AnalysisCFood static method) (caosadvancedtools.scifolder.experiment_cfood.ExperimentCFood static method) (caosadvancedtools.scifolder.publication_cfood.PublicationCFood static method) (caosadvancedtools.scifolder.result_table_cfood.ResultTableCFood static method) (caosadvancedtools.scifolder.simulation_cfood.SimulationCFood static method) (caosadvancedtools.scifolder.software_cfood.SoftwareCFood static method) get_record() (in module caosadvancedtools.cfood) get_records() (caoscrawler.identifiable_adapters.LocalStorageIdentifiableAdapter method) get_records_current_scope() (caoscrawler.stores.RecordStore method) get_recordtype() (in module caosadvancedtools.cfood) get_referenced_files() (in module caosadvancedtools.utils) get_referenced_recordtype() (in module linkahead.common.datatype) get_registered_identifiable() (caoscrawler.identifiable_adapters.CaosDBIdentifiableAdapter method) (caoscrawler.identifiable_adapters.IdentifiableAdapter method) (caoscrawler.identifiable_adapters.LocalStorageIdentifiableAdapter method) get_representation() (caoscrawler.identifiable.Identifiable method) get_row_type_column_index() (in module caosadvancedtools.table_json_conversion.xlsx_utils) get_rt() (in module caosadvancedtools.scifolder.withreadme) get_server_properties() (in module linkahead.common.administration) get_server_property() (in module linkahead.common.administration) get_shared_filename() (in module caosadvancedtools.serverside.helper) get_shared_resource_link() (in module caoscrawler.utils) get_size() (linkahead.connection.encode.MultipartParam method) get_storage() (caoscrawler.stores.Store method) get_subschema() (in module caosadvancedtools.table_json_conversion.xlsx_utils) get_timestamp() (in module caosadvancedtools.serverside.helper) get_type_of_entity_with() (in module linkahead.apiutils) get_unique_savename() (caosadvancedtools.serverside.helper.NameCollector method) get_unused_additional_ui_schema_keys() (caosadvancedtools.json_schema_exporter.JsonSchemaExporter method) get_updates() (caosadvancedtools.cache.UpdateCache method) get_value() (in module caosadvancedtools.crawler) get_version_history (C++ function) get_version_timestamp (C++ function) get_versionid() (linkahead.common.models.Entity method) get_warnings() (linkahead.common.models.Container method) (linkahead.common.models.Entity method) get_worksheet_for_path() (in module caosadvancedtools.table_json_conversion.xlsx_utils) get_xls_header() (in module caosadvancedtools.scifolder.utils) getAbsoluteScriptPath(String[]) (Java method) getAccess() (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10] getAccessManager() (Java method) getAccountAccess(AccessControlTransaction) (Java method) getAccTime() (Java method) getAffiliation() (Java method) getAggregate() (Java method), [1] getAll() (Java method) getAllEntityPermissions() (Java method) GetAllNames (Java class) GetAllNamesImpl (Java interface) getAuthorizationInfo(Subject) (Java method) getAvailableSize() (Java method) getAvg() (Java method) getBasePath() (Java method), [1] getBasepath() (Java method) getBenchmark() (Java method), [1], [2], [3] getBenchmark(Class) (Java method) getBenchmark(String) (Java method) getBitNumber() (Java method) getBitSet() (Java method), [1] getBody() (Java method) getBuildNumber() (Java method), [1] getBuildNumberFile() (Java method) getCache() (Java method) getCache(String) (Java method), [1], [2], [3], [4] getCacheKey() (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10] getCacheKey(boolean) (Java method) getChain() (Java method) getChannel() (Java method) getCharacterSet() (Java method) getChecksum() (Java method) getChecksum(File) (Java method) getChild() (Java method) getCode() (Java method), [1] getCollectionName() (Java method), [1] getCommandLine() (Java method) getComponent() (Java method) getConfiguration(LoggerContext, String, URI) (Java method) getConfiguredJobs(EntityID, EntityID, EntityInterface, Transaction) (Java method) getConnection() (Java method), [1], [2], [3], [4], [5], [6], [7], [8] getContainer() (Java method), [1], [2], [3] getConverter() (Java method), [1] getCount() (Java method), [1] getCreatedTimestamp() (Java method) getCredentials() (Java method), [1], [2] getCRID() (Java method) getCuid() (Java method), [1], [2] getCurrentMaxId() (Java method) getDatatype() (Java method), [1], [2], [3], [4] getDatatypeName() (Java method) getDatatypes() (Java method) getDate() (Java method), [1] getDateTime() (Java method), [1] getDefaultRealm() (Java method) getDefaultRoles(String, String) (Java method) getDefaultUserEmail(Principal) (Java method) getDefaultUserEmail(String) (Java method), [1], [2] getDefaultUserEmail(String, String) (Java method) getDefaultUserStatus(Principal) (Java method) getDefaultUserStatus(String) (Java method), [1], [2] getDefaultUserStatus(String, String) (Java method) getDependentEntities (C++ function) GetDependentEntities (Java class) GetDependentEntities(EntityID) (Java constructor) GetDependentEntitiesImpl (Java interface) getDescription() (Java method), [1], [2], [3], [4], [5], [6] getDigest() (Java method) getDisposition() (Java method) getDomain() (Java method), [1], [2], [3] getDomainEntity() (Java method) getDropOffBox() (Java method) getEmail() (Java method) getEncodings() (Java method) getEntities() (Java method) getEntity() (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10] getEntityACL() (Java method), [1], [2] getEntityAcl() (Java method) getEntityById(EntityID) (Java method), [1] getEntityByName(String) (Java method), [1] getEntityID(String) (Java method) getEntityPermission(int) (Java method) getEntityPermission(org.linkahead.api.entity.v1.EntityPermission) (Java method) getEntityPermission(String) (Java method) getEntityStatus() (Java method), [1], [2] getErrors() (Java method) getErrorStream() (Java method) getETag() (Java method) getEUB_NF1() (Java method), [1], [2] getEUB_NF2() (Java method), [1], [2], [3] getException() (Java method) getExclusiveUpperBound() (Java method), [1], [2] getExpirationDate() (Java method) getExpires() (Java method) getExpiresAfter() (Java method) getFailureSeverity() (Java method) getFile() (Java method), [1] getFile(String) (Java method), [1], [2], [3], [4], [5], [6] getFileBuffer(String) (Java method) getFileElement(String, File) (Java method) GetFileIterator (Java class) GetFileIterator(String) (Java constructor) GetFileIteratorImpl (Java interface) getFileProperties() (Java method), [1], [2], [3]

GetFileRecordByPath (Java class) GetFileRecordByPath(String) (Java constructor) GetFileRecordByPathImpl (Java interface) getFiles() (Java method) getFilesCount() (Java method) getFileUpload(String) (Java method) getFilter() (Java method), [1] getFilters() (Java method) getFinalState() (Java method) getFlag() (linkahead.common.models.Query method) getFlag(String) (Java method), [1], [2] getFlags() (Java method), [1], [2], [3], [4] getForwardedProto(Request) (Java method) getFreshSalt() (Java method) getFromAddr() (Java method) getFromFileSystem(String) (Java method) getFromName() (Java method) getFromShared(String) (Java method) getFromState() (Java method) getHash() (Java method) getheader() (linkahead.connection.interface.CaosDBHTTPResponse method) (linkahead.connection.mockup.MockUpResponse method) getheaders() (linkahead.connection.interface.CaosDBHTTPResponse method) (linkahead.connection.mockup.MockUpResponse method) getHelper() (Java method) getHelper(String) (Java method), [1] getHistoryItems() (Java method) getID() (Java method), [1] getId() (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12] getIdByName (C++ function) GetIDByName (Java class) GetIDByName(String) (Java constructor) GetIDByName(String, boolean) (Java constructor) GetIDByName(String, String) (Java constructor) GetIDByName(String, String, boolean) (Java constructor) GetIDByNameImpl (Java interface) getIdVersion() (Java method), [1], [2], [3] getILB_NF1() (Java method), [1], [2] getILB_NF2() (Java method), [1], [2], [3] getImplementation(Class) (Java method) getInclusiveLowerBound() (Java method), [1], [2] getIndex() (Java method) GetInfo (Java class) GetInfo(ProtoInfo) (Java constructor) getInfoAccess(Info) (Java method) GetInfoImpl (Java interface) getInitAccess(Initialization) (Java method) getInitialState() (Java method) getInstance() (Java method), [1], [2], [3] getInstance(Request) (Java method) getInstance(String) (Java method) getInstances() (Java method) getInternalRealm() (Java method) getISO8601Offset(TimeZone, long) (Java method) getIterator() (Java method), [1] getJob() (Java method) getJob(String, JobFailureSeverity, EntityInterface, Transaction) (Java method) getKey() (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9] getKey(OneTimeAuthenticationToken) (Java method) getLanguages() (Java method) getLastConsistencyCheck() (Java method) getList() (Java method), [1] getLocationRef() (Java method) getLogger() (Java method) getLogoutCookies() (Java method) getLogoutSessionTokenCookie() (Java method) getMap() (Java method) getMapping() (Java method) getMaxChunkSize() (Java method) getMaxFileSize() (Java method) getMaxReplays() (Java method), [1] getMeasurements() (Java method) getMediaType() (Java method) getMessage() (Java method) getMessageCode(Message) (Java method) getMessages() (Java method), [1], [2], [3] getMessages(String) (Java method), [1], [2] getMimeType(File) (Java method) getModificationDate() (Java method) getMySQLHelper() (Java method) getName() (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17] getNanoseconds() (Java method) getNegation() (Java method) getNextChunk() (Java method) getNextChunk(String) (Java method) getOffset(int, int, int, int, int, int) (Java method) getOperator() (Java method), [1], [2] getOriginal() (Java method) getOutput() (Java method) getOwner() (Java method) getOwnerACLFor(ResponsibleAgent) (Java method) getOwnerACLFor(Subject) (Java method) getOwners() (Java method) getOwners(Collection) (Java method) getPaging() (Java method) getParents() (Java method), [1], [2], [3] getPath() (Java method) getPath(String) (Java method) getPattern() (Java method) getPermission() (Java method), [1] getPermission(String, String) (Java method) getPermission(Subject) (Java method) getPermissions() (Java method), [1] getPermissionsFor(Subject) (Java method) getPermissionsFor(Subject, Collection) (Java method) getPermissionsFromBitSet(long) (Java method) getPermissionsPerWildCard(String) (Java method) getPIdx() (Java method) getPredecessors() (Java method) getPredecessors(String, boolean) (Java method) getPreviousPrincipals() (Java method) getPrincipal() (Java method), [1], [2], [3] getPrincipals() (Java method) getPriorityEntityACL() (Java method) getPriorityEntityACL(EntityACL) (Java method) getProcess(String, String) (Java method) getProperties() (Java method), [1], [2], [3] getPropertiesCount() (Java method) getProperty() (Java method), [1] getProperty(String) (Java method) getPublicFile(String) (Java method) getPublicFilePath(String) (Java method) getPublicRootPath() (Java method) getPurpose() (Java method) getPurposeMap() (Java method) getPurposeMap(List) (Java method) getQuery() (Java method), [1], [2], [3], [4], [5], [6], [7] getQueryTemplateDefinition() (Java method), [1], [2] getRange() (Java method) getRawOffset() (Java method) getReadableByteSize(Long) (Java method) getReader() (Java method) getRealm() (Java method), [1], [2] getRecordsCount() (Java method) getRecordTypesCount() (Java method) getRegistration() (Java method) getRegistrationStatus() (Java method) getReplaysTimeout() (Java method) getReplayTimeout() (Java method) getRequestedItems() (Java method) getRequestId() (Java method), [1] getResponsibleAgent() (Java method) getResult() (Java method) getResultingACL(Collection) (Java method) getResults() (Java method) getRole() (Java method), [1], [2], [3], [4], [5] getRoles() (Java method), [1], [2], [3], [4], [5], [6] getRoles(Subject) (Java method) getRootInstance() (Java method) getRules() (Java method), [1], [2] getSchedule() (Java method), [1] getScriptFile(String) (Java method) getSecureFilename(int) (Java method) getSelectedValue(Selection, EntityInterface) (Java method) getSelections() (Java method), [1], [2], [3] getSelector() (Java method) getSerializeFieldStrategy() (Java method), [1], [2] getServerInfo() (Java method) getServerProperties() (Java method) getServerProperty(String) (Java method) getServerRootURI() (Java method) getSession() (Java method) getSession(boolean) (Java method) getSessionInfo(GetSessionInfoRequest, StreamObserver) (Java method) getSessionPermissions(SelfValidatingAuthenticationToken) (Java method) getSessionRoles(SelfValidatingAuthenticationToken) (Java method) getSessionTimeoutSeconds() (Java method) getShared() (Java method) getSharedDir() (Java method) getShiroConfig() (Java method) getShortName() (Java method) getSignature() (Java method), [1] getSize() (Java method), [1], [2] getSize(File) (Java method) getSourceSet() (Java method), [1], [2], [3], [4], [5], [6] getSparseEntity() (Java method), [1], [2] getSRID() (Java method), [1], [2], [3] getState() (Java method) getState(boolean) (Java method) getState(EntityInterface) (Java method) getState(EntityInterface, boolean) (Java method) getStateACL() (Java method) getStateClientMessages(boolean) (Java method) getStateClientMessages(EntityInterface, boolean) (Java method) getStateDescription() (Java method) getStateEntity() (Java method) getStateId() (Java method) getStatementStatus() (Java method), [1], [2] getStateModel() (Java method) getStateModelEntity() (Java method) getStateModelName() (Java method) getStateProperties(boolean) (Java method) getStateProperties(EntityInterface, boolean) (Java method) getStateRecordType() (Java method) getStates() (Java method) getStatus() (Java method) getStdErr() (Java method) getStdErrFile() (Java method) getStdErrFile(File) (Java method) getStdOut() (Java method) getStdOutFile() (Java method) getStdOutFile(File) (Java method) getStream() (Java method) getString() (Java method) getStringPermissions(Subject) (Java method) getStringUnit(EntityInterface) (Java method) getSubBenchmarks() (Java method) getSubject() (Java method) getSubProperty() (Java method), [1] getSubselection() (Java method) getSubSelects(List, String) (Java method) getSuccessors() (Java method) getSuccessors(String, boolean) (Java method) getSupportedTypes() (Java method) getTable() (Java method), [1], [2], [3], [4], [5], [6], [7] getTag() (Java method) getTarget() (Java method), [1], [2] getTargetSet() (Java method), [1], [2], [3], [4], [5], [6] getTargetSetCount() (Java method), [1], [2], [3], [4], [5], [6] getText() (Java method) getTextData() (Java method) getThumbnail() (Java method) getThumbnailAttribute(File, File, String) (Java method) getTimeout() (Java method) getTimeoutMs() (Java method) getTimestamp() (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9] getTimeZone() (Java method) getTimeZoneFromDate() (Java method) getTmp() (Java method) getTmpDir() (Java method) getTmpHomeDir() (Java method) getTmpIdentifier() (Java method) getTmpWorkingDir() (Java method), [1] getToAddr() (Java method) getToElementStrategy() (Java method), [1], [2], [3] getToName() (Java method) getToState() (Java method) getTouchedTimestamp() (Java method) getTransaction() (Java method), [1] getTransactionBenchmark() (Java method), [1], [2], [3] getTransactionLogMessages() (Java method), [1], [2] getTransactionStage() (Java method), [1] getTransactionType(EntityInterface) (Java method) getTransactor() (Java method), [1] getTransitions() (Java method) getTransmissionSettings() (Java method), [1], [2] getType() (Java method), [1] getType(EntityID) (Java method) getUID() (Java method) getUndoHandler() (Java method) getUnit() (Java method), [1], [2] getUnit(String) (Java method), [1] GetUpdateableChecksums (Java class) GetUpdateableChecksumsImpl (Java interface) getUploadFile(FileTransmissionId) (Java method), [1] getUploadFilesDir() (Java method) getUseCacheResourceDelegate() (Java method), [1], [2] getUser() (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10] getUserElement() (Java method), [1], [2], [3] getUserElement(ProtoUser) (Java method) getUsername() (Java method), [1], [2] getUserRolesElement() (Java method), [1] getUserRolesElement(Set) (Java method) getUsers() (Java method), [1] getUTCSeconds() (Java method) getUtils() (Java method) getValidator() (Java method), [1] getValue() (Java method), [1], [2], [3], [4], [5], [6] getValue(String) (Java method) getVDatetime() (Java method) getVDouble() (Java method) getVersion() (Java method), [1], [2], [3], [4] getVersion(String) (Java method), [1], [2] getVersionInfo(GetVersionInfoRequest, StreamObserver) (Java method) getVerySparseEntity() (Java method), [1], [2] getVInt() (Java method) getWebinterfaceRootURI() (Java method) getWebinterfaceURI(String) (Java method) getWebUIRef(Reference) (Java method) getWrapped() (Java method), [1] getXSLScript() (Java method), [1] getXSLScriptClone() (built-in function) global_acl (linkahead.common.models.ACL attribute) GLOBAL_PERMISSIONS (Java field) globalError() (built-in function) grant() (linkahead.common.models.ACL method) (linkahead.common.models.Entity method) grant(ResponsibleAgent, boolean, Collection) (Java method) grant(ResponsibleAgent, boolean, EntityPermission) (Java method) grant(ResponsibleAgent, boolean, int) (Java method) grant(ResponsibleAgent, boolean, String) (Java method) grant(ResponsibleAgent, int) (Java method) grant(ResponsibleAgent, String) (Java method) GregorianCalendarDateTimeStringStrategy (Java class) GregorianCalendarDateTimeStringStrategy(GregorianCalendar) (Java constructor) GregorianCalendarDateTimeStringStrategy(long) (Java constructor) Grouped (class in linkahead.utils.plantuml) GRPCServer (Java class) GrpcToCaosDBConverters (Java class) Guard (class in caosadvancedtools.guard) guessRealm(String) (Java method) guessRealm(String, String) (Java method)

H

h5_attr_to_property() (in module caosadvancedtools.cfoods.h5) H5CFood (class in caosadvancedtools.cfoods.h5) H5DatasetConverter (class in caoscrawler.converters.hdf5_converter) H5DatasetElement (class in caoscrawler.converters.hdf5_converter) h5file (caosadvancedtools.cfoods.h5.H5CFood attribute) H5FileConverter (class in caoscrawler.converters.hdf5_converter) H5GroupConverter (class in caoscrawler.converters.hdf5_converter) H5GroupElement (class in caoscrawler.converters.hdf5_converter) H5NdarrayConverter (class in caoscrawler.converters.hdf5_converter) H5NdarrayElement (class in caoscrawler.converters.hdf5_converter) handle(Request, Response) (Java method), [1] handle_negative_ids() (caoscrawler.sync_graph.SyncGraph method) handle_value() (in module caoscrawler.converters.converters) handleException(StreamObserver, Exception) (Java method) handleForm(Form) (Java method) handleMail(Mail) (Java method), [1], [2] handleMultiparts(Representation) (Java method) handleRetrieveContainer(RetrieveContainer) (Java method), [1], [2], [3] handleThrowable(Throwable) (Java method) has_error() (linkahead.exceptions.TransactionError method) has_errors() (linkahead.common.models.Container method) (linkahead.common.models.Entity method) (linkahead.common.models.QueryTemplate method) has_id() (linkahead.common.models.QueryTemplate method) has_parent() (in module caoscrawler.utils) (linkahead.common.models.Entity method) (linkahead.high_level_api.CaosDBPythonEntity method) has_suitable_cfood() (caosadvancedtools.cfood.CMeal class method) has_warnings() (linkahead.common.models.Container method) hasAllRoles(Collection) (Java method) hasChecksum() (Java method) hasCuid() (Java method), [1], [2] hasDatatype() (Java method), [1], [2] hasDescription() (Java method), [1], [2] hasEntityACL() (Java method), [1], [2] hasEntityStatus() (Java method), [1], [2] hasErrors() (Java method) hasFileProperties() (Java method), [1], [2] hash() (caosadvancedtools.suppressKnown.SuppressKnown method) hash(File) (Java method), [1] hash(MessageDigest, String, String, int) (Java method) hash_entity() (caosadvancedtools.cache.IdentifiableCache static method) HashAlgorithm (Java interface) hashCode() (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12] Hasher (Java interface) HashException (Java class) HashException(String) (Java constructor) HashException(Throwable) (Java constructor) HashNotReadyException (Java class)

HashNotReadyException() (Java constructor) HashPasswordValidator (Java class) HashPasswordValidator(String, String, String, int) (Java constructor) HashTimeoutException (Java class) HashTimeoutException(String) (Java constructor) hasId() (Java method), [1], [2], [3], [4] hasKnownSize() (Java method) hasMessage(String) (Java method), [1], [2] hasMessages() (Java method), [1], [2] hasName() (Java method), [1], [2] hasNanoseconds() (Java method) hasNext() (Java method), [1] hasPaging() (Java method) hasParents() (Java method), [1], [2], [3] hasPath() (Java method) hasPermission(Permission) (Java method), [1], [2] hasPermission(Subject, Permission) (Java method), [1], [2] hasProperties() (Java method), [1], [2], [3] hasRole() (Java method), [1], [2] hasRole(String) (Java method) hasRoles(List) (Java method) hasSize() (Java method) hasStatementStatus() (Java method), [1], [2] hasSubProperty() (Java method), [1] hasTmpIdentifier() (Java method) hasTransactionLogMessages() (Java method), [1], [2] hasUnit() (Java method), [1], [2] hasValue() (Java method), [1], [2] hasVersion() (Java method), [1], [2], [3], [4] header (caosadvancedtools.scifolder.withreadme.WithREADME property) HeaderField (class in caosadvancedtools.scifolder.withreadme) high_level_type_for_role() (in module linkahead.high_level_api) high_level_type_for_standard_type() (in module linkahead.high_level_api) History (Java class) hour (Java field) HTTPClientError httpDelete() (Java method) httpDeleteInChildClass() (Java method), [1], [2], [3], [4] HTTPForbiddenError httpGet() (Java method) httpGetInChildClass() (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14] httpPost(Representation) (Java method) httpPostInChildClass(Representation) (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10] httpPut(Representation) (Java method) httpPutInChildClass(Representation) (Java method), [1], [2], [3], [4], [5] HTTPResourceNotFoundError HTTPServerError HttpToHttpsRedirector (Java class) HttpToHttpsRedirector(int) (Java constructor) HTTPURITooLongError

I

id (Java field), [1], [2], [3], [4], [5] (linkahead.common.models.Entity property) (linkahead.common.state.State property) (linkahead.common.versioning.Version attribute) (linkahead.high_level_api.CaosDBPropertyMetaData attribute) (linkahead.high_level_api.CaosDBPythonEntity property) (linkahead.high_level_api.CaosDBPythonUnresolvedParent attribute) id_query() (in module linkahead.apiutils) IdAndServerMessagesOnlyStrategy (Java class) Identifiable (class in caoscrawler.identifiable) IdentifiableAdapter (class in caoscrawler.identifiable_adapters) IdentifiableCache (class in caosadvancedtools.cache) identifier (caosadvancedtools.scifolder.withreadme.DataModel attribute) IDFilter (Java class) IDFilter(String, String, String) (Java constructor) idRegistry (Java field) IdVersionAclTriplet (Java class) IdVersionAclTriplet(String, String, String) (Java constructor) idx (Java field) IGNORE (caosadvancedtools.table_json_conversion.xlsx_utils.ColumnType attribute) (caosadvancedtools.table_json_conversion.xlsx_utils.RowType attribute) (Java field), [1] ILLEGAL_FLAG_VALUE (Java field) ILLEGAL_INHERITANCE_MODE (Java field) implies(Permission) (Java method) import_xml() (in module caosadvancedtools.import_from_xml) importance (linkahead.high_level_api.CaosDBPropertyMetaData attribute) ImpossibleMergeError INACTIVE (Java field) includes(Variant) (Java method) inclusiveLowerBound (Java field) incomplete_date_converter() (in module caosadvancedtools.table_importer) inDaylightTime(Date) (Java method) index (Java field) IndexedSingleValue (Java class) IndexedSingleValue(int, SingleValue) (Java constructor) IndexedSingleValue(SingleValue) (Java constructor) Info (class in linkahead.common.models) (Java class) (Java field) info() (linkahead.queries.ClientQueryCache class method) InfoAccess (Java class) InfoAccess(Info) (Java constructor) InfoResource (Java class) inform_about_pending_changes() (caoscrawler.crawl.Crawler static method) Inheritance (Java class) INHERITANCE_MODE (Java enum) InheritInitialState (Java class) INIT (Java field) init() (built-in function), [1], [2] (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14] init(Access) (Java method) init(Config) (Java method) init(JobFailureSeverity, EntityInterface, Transaction) (Java method) init(String, boolean) (Java method) init_actions_box() (built-in function) init_data_model() (in module caosadvancedtools.serverside.helper) init_export_history_buttons() (built-in function) init_form_caching() (built-in function) init_load_history_buttons() (built-in function) init_restore_version_buttons() (built-in function) init_select_picker() (built-in function) init_validator() (built-in function) InitAccess (Java class) InitAccess(Initialization) (Java constructor) initBackend() (Java method) initBackReference (C++ function) initCaching() (Java method) initConfig() (Java method) initConfig(InputStream) (Java method) initConnection(TransactionInterface) (Java method) initEntity (C++ function) InitEntityStateJobs (Java class) INITIAL_STATE_PROPERTY_NAME (Java field) Initialization (Java class) initialize() (linkahead.queries.ClientQueryCache class method) initialize_converters() (caoscrawler.crawl.Crawler method) (in module caoscrawler.scanner) initializeDatatypes(Container) (Java method) initMap() (Java method) initOnDocumentReady() (built-in function) initOneTimeTokens() (Java method) initPOVPropertiesTable (C++ function) initPOVRefidsTable (C++ function) initServerProperties() (Java method), [1] initShiro() (Java method) initShiro(Ini) (Java method) initSubEntity (C++ function) initTimeZone() (Java method) initTransaction(Connection, WriteTransactionInterface) (Java method) injectAuthToken(String[]) (Java method) injectTemplate() (built-in function) InputCredentialsProvider (class in linkahead.connection.authentication.input) InputStream2String(InputStream) (Java method) InputStream2String(InputStream, String) (Java method) INSERT (caoscrawler.crawl.SecurityMode attribute) (Java field) insert() (caosadvancedtools.cache.IdentifiableCache method) (caosadvancedtools.cache.UpdateCache method) (linkahead.common.models.Container method) (linkahead.common.models.Entity method) (linkahead.common.models.QueryTemplate method) insert(EntityID, String) (Java method), [1] insert(String, ServerStat) (Java method), [1] insert_id_based_on_name() (in module caosadvancedtools.cfood) insert_list() (caosadvancedtools.cache.IdentifiableCache method) insert_missing_structure() (caosadvancedtools.cfoods.h5.H5CFood method) insert_single_child_version (C++ function) insert_yaml_file() (in module linkahead.yamlapi) insertEntity (C++ function) InsertEntity (Java class) InsertEntity(Element) (Java constructor) InsertEntity(Element, Role) (Java constructor) InsertEntity(String, Role) (Java constructor) insertEntityCollection (C++ function) insertEntityDataType (C++ function) InsertEntityDatatype (Java class) InsertEntityDatatype(EntityInterface) (Java constructor) InsertEntityDatatypeImpl (Java interface) InsertEntityProperties (Java class) InsertEntityProperties(EntityInterface) (Java constructor) InsertEntityPropertiesImpl (Java interface) insertEntityProperty (C++ function) InsertEntityTransaction (Java class) InsertEntityTransaction(TransactionContainer) (Java constructor) InsertFile (Java class) InsertFile(EntityInterface) (Java constructor) InsertFilesInDir (Java class) INSERTION (Java field) insertIsa (C++ function) InsertLinCon (Java class) InsertLinCon(LinCon) (Java constructor) InsertLinCon(long, long, double, long, long, double) (Java constructor) InsertLinConImpl (Java interface)

insertParam() (built-in function) InsertParents (Java class) InsertParents(EntityInterface) (Java constructor) InsertParentsImpl (Java interface) InsertRole (Java class) InsertRole(Role) (Java constructor) insertRole(Role) (Java method), [1] InsertRoleImpl (Java interface) InsertRoleTransaction (Java class) InsertRoleTransaction(Role) (Java constructor) InsertSparseEntity (Java class) InsertSparseEntity(EntityInterface) (Java constructor) InsertSparseEntityImpl (Java interface) InsertTransactionHistory (Java class) InsertTransactionHistory(TransactionContainer, String, String, UTCDateTime) (Java constructor) InsertTransactionHistoryImpl (Java interface) InsertUserTransaction (Java class) InsertUserTransaction(ProtoUser, String) (Java constructor) InsertUserTransaction(String, String, String, UserStatus, String) (Java constructor) INSTANTIATION (Java field) integer_data (Java field) INTEGER_OUT_OF_RANGE (Java field) IntegerDatatype (Java class) IntegerElement (class in caoscrawler.structure_elements.structure_elements) IntegerElementConverter (class in caoscrawler.converters.converters) IntegrityException (Java class) IntegrityException(String) (Java constructor) IntegrityException(Throwable) (Java constructor) interceptCall(ServerCall, Metadata, ServerCallHandler) (Java method), [1] InternalUserSource (Java class) Interval (Java interface) INVALID_USER_NAME(String) (Java method) InvalidIdentifiableYAML invert_ids() (in module caosadvancedtools.export_related) invoke() (Java method) is_applicable() (built-in function), [1], [2], [3], [4] is_bottom_in_viewport() (built-in function) is_complete_history (linkahead.common.versioning.Version attribute) is_empty() (linkahead.common.models.ACL method) is_exploded_sheet() (in module caosadvancedtools.table_json_conversion.xlsx_utils) is_filename_allowed() (in module caosadvancedtools.scifolder.utils) is_head (linkahead.common.versioning.Version attribute) is_identifiable_for_record() (caoscrawler.identifiable_adapters.LocalStorageIdentifiableAdapter method) is_int() (in module linkahead.common.utils) is_list_datatype() (in module linkahead.common.datatype) is_permitted() (linkahead.common.models.ACL method) (linkahead.common.models.Entity method) is_recursively_none() (in module caosadvancedtools.table_json_conversion.xlsx_utils) is_reference() (in module linkahead.common.datatype) (linkahead.common.models.Property method) is_set() (built-in function) is_table() (built-in function) is_valid() (built-in function) (linkahead.common.models.Container method) isActive (Java field) isActive(Principal) (Java method) isAllowance(long) (Java method) isAnonymous() (Java method) isAnonymous(Principal) (Java method) isAnonymous(Subject) (Java method) isAuthenticated() (Java method) isAvailable() (Java method) isCompatible(Variant) (Java method) isCompleteHistory() (Java method) isDatatypeOverride() (Java method), [1], [2] isDebugMode() (Java method) isDenial(long) (Java method) isEmpty() (Java method), [1] isExcluded(File) (Java method) isExpired() (Java method), [1], [2] isFinal() (Java method) isFromOneTimeTokenRealm(Subject) (Java method) isFromState(State) (Java method) isGrant() (Java method), [1] isHashValid() (Java method) isHead() (Java method) isId() (Java method) isInitial() (Java method) isInternal() (Java method) isMe() (Java method) isName() (Java method) isNotIncluded(File) (Java method) isOpen() (Java method) isOwnerBitSet(long) (Java method) isParent() (Java method) isParsed (Java field) isPermitted(List) (Java method) isPermitted(Permission) (Java method) isPermitted(String) (Java method), [1] isPermitted(Subject) (Java method) isPermitted(Subject, org.apache.shiro.authz.Permission) (Java method) isPermittedAll(Collection) (Java method) isPermittedAll(String) (Java method) isPickupable() (Java method) isPriority() (Java method), [1] isPriorityBitSet(long) (Java method) isProperty() (Java method) isReference() (Java method), [1], [2] isReferenceList() (Java method), [1], [2] isRemembered() (Java method) isReserved(EntityID) (Java method) isResponsibleAgentExistent(ResponsibleAgent) (Java method) isRFC822Compliant(String) (Java method) isRoleExisting(String) (Java method) isRunAs() (Java method) isSelectable() (Java method) isStage2Replacement() (Java method) isSubDirSymlinkSave(File, File) (Java method) isSubtype (C++ function) IsSubType (Java class) isSubType() (Java method) IsSubType(EntityID, EntityID) (Java constructor) IsSubType(EntityID, String) (Java constructor) isSubType(EntityInterface, EntityInterface) (Java method) IsSubTypeImpl (Java interface) isSymlink(File) (Java method) isSymlinkPointingTo(File, File) (Java method) isTemporary() (Java method) isToBeSet(String) (Java method), [1] isToState(State) (Java method) isTransient() (Java method) isUserExisting(Principal) (Java method) isUserExisting(String) (Java method), [1], [2] isValid() (Java method) isValid(String) (Java method) isValid(String, String) (Java method), [1], [2], [3], [4] isValid(String, String, String) (Java method) isValid(T) (Java method) isValidSubType(EntityID, EntityID) (Java method) isVersioned() (Java method), [1], [2], [3], [4], [5], [6] iter_encode() (linkahead.connection.encode.MultipartParam method) iterator() (Java method) iteritems() (caosadvancedtools.crawler.Crawler method) (caosadvancedtools.crawler.FileCrawler method) (caosadvancedtools.crawler.TableCrawler method)

J

JCSCacheHelper (Java class) JdomConverter (Java class) JdomRepresentation (Java class) JdomRepresentation(Document, String, String) (Java constructor) Job (Java class) Job() (Java constructor) job(String) (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13] JobAnnotation (Java annotation) JobConfig (Java class)

JobConfig() (Java constructor) JobConfig(File) (Java constructor) JobFailureSeverity (Java enum) JobTarget (Java interface) JSONFile (class in caoscrawler.structure_elements.structure_elements) JSONFileConverter (class in caoscrawler.converters.converters) JsonSchemaDefinitionError JsonSchemaExporter (class in caosadvancedtools.json_schema_exporter) JsonSchemaParser (class in caosadvancedtools.models.parser)

K

KEY_ADMIN_EMAIL (Java field) KEY_ADMIN_NAME (Java field) KEY_AUTH_OPTIONAL (Java field) KEY_AUTHTOKEN_CONFIG (Java field) KEY_BASE_PATH (Java field) KEY_BUGTRACKER_URI (Java field) KEY_BUILD_TIMESTAMP (Java field) KEY_CACHE_CONF_LOC (Java field) KEY_CACHE_DISABLE (Java field) KEY_CERTIFICATES_KEY_PASSWORD (Java field) KEY_CERTIFICATES_KEY_STORE_PASSWORD (Java field) KEY_CERTIFICATES_KEY_STORE_PATH (Java field) KEY_CHECK_ENTITY_ACL_ROLES_MODE (Java field) KEY_CHOWN_SCRIPT (Java field) KEY_CONTEXT_ROOT (Java field) KEY_DEFAULT_REALM (Java field) KEY_DEFAULT_USER_STATUS (Java field) KEY_DROP_OFF_BOX (Java field) KEY_EMAIL (Java field) KEY_EXCLUDE (Java field) KEY_FILE_MESSAGES (Java field) KEY_FILE_POLICY (Java field) KEY_FILE_SYSTEM_ROOT (Java field) KEY_FIND_QUERY_DEFAULT_ROLE (Java field) KEY_GLOBAL_ENTITY_PERMISSIONS_FILE (Java field) KEY_GROUP (Java field) KEY_GRPC_RESPONSE_LOG_FORMAT (Java field) KEY_GRPC_SERVER_PORT_HTTP (Java field) KEY_GRPC_SERVER_PORT_HTTPS (Java field) KEY_HTTPS_DISABLED_CIPHER_SUITES (Java field) KEY_HTTPS_DISABLED_PROTOCOLS (Java field) KEY_HTTPS_ENABLED_CIPHER_SUITES (Java field) KEY_HTTPS_ENABLED_PROTOCOLS (Java field) KEY_INCLUDE (Java field) KEY_INITIAL_CONNECTIONS (Java field) KEY_INSERT_FILES_IN_DIR_ALLOWED_DIRS (Java field) KEY_JOB_RULES_CONFIG (Java field) KEY_LOCAL_ADDRESS (Java field) KEY_MAIL_HANDLER_CLASS (Java field) KEY_MAIL_TO_FILE_HANDLER_LOC (Java field) KEY_MAX_CONNECTIONS (Java field) KEY_MYSQL_DATABASE_NAME (Java field) KEY_MYSQL_HOST (Java field) KEY_MYSQL_PORT (Java field) KEY_MYSQL_SCHEMA_VERSION (Java field) KEY_MYSQL_USER_NAME (Java field)

KEY_MYSQL_USER_PASSWORD (Java field) KEY_NEW_USER_DEFAULT_ACTIVITY (Java field) KEY_NO_REPLY_EMAIL (Java field) KEY_NO_REPLY_NAME (Java field) KEY_ONE_TIME_TOKEN_EXPIRES_MS (Java field) KEY_ONE_TIME_TOKEN_REPLAYS_TIMEOUT_MS (Java field) KEY_PAM_SCRIPT (Java field) KEY_PASSWORD_STRENGTH_REGEX (Java field) KEY_PASSWORD_WEAK_MESSAGE (Java field) KEY_POLICY_COMPONENT (Java field) KEY_PROJECT_NAME (Java field) KEY_PROJECT_REVISTION (Java field) KEY_PROJECT_VERSION (Java field) KEY_QUERY_FILTER_ENTITIES_WITHOUT_RETRIEVE_PERMISSIONS (Java field) KEY_REALM_CLASS (Java field) KEY_REALMS (Java field) KEY_REDIRECT_HTTP_TO_HTTPS_PORT (Java field) KEY_REMOTE_ADDRESS (Java field) KEY_REST_RESPONSE_LOG_FORMAT (Java field) KEY_ROLES (Java field) KEY_SERVER_BIND_ADDRESS (Java field) KEY_SERVER_NAME (Java field) KEY_SERVER_OWNER (Java field) KEY_SERVER_PORT_HTTP (Java field) KEY_SERVER_PORT_HTTPS (Java field) KEY_SERVER_SIDE_SCRIPTING_BIN_DIR (Java field) KEY_SERVER_SIDE_SCRIPTING_BIN_DIRS (Java field) KEY_SERVER_SIDE_SCRIPTING_HOME_DIR (Java field) KEY_SERVER_SIDE_SCRIPTING_WORKING_DIR (Java field) KEY_SESSION_TIMEOUT_MS (Java field) KEY_SHARED_FOLDER (Java field) KEY_SUDO_PASSWORD (Java field) KEY_TIMEZONE (Java field) KEY_TMP_FILES (Java field) KEY_TRANSACTION_BENCHMARK_ENABLED (Java field) KEY_USER (Java field) KEY_USER_AGENT (Java field) KEY_USER_FOLDERS (Java field) KEY_USER_NAME_INVALID_MESSAGE (Java field) KEY_USER_NAME_VALID_REGEX (Java field) KEY_USER_SOURCES_INI_FILE (Java field) KEY_WEBUI_HTTP_HEADER_CACHE_MAX_AGE (Java field) KeyringCaller (class in linkahead.connection.authentication.keyring) keySet() (Java method) known_permissions (linkahead.common.models.Permissions attribute) kv_to_xml() (in module linkahead.yamlapi) kw_present() (in module caosadvancedtools.pandoc_header_tools)

L

LazyEntityResolver (Java class) LazyEntityResolver(EntityInterface, Transaction) (Java constructor) LeapSecondDateTimeStringStrategy (Java class) LeapSecondDateTimeStringStrategy(GregorianCalendar, int) (Java constructor) LEFT_DELIMITER (Java field) LegacyIds (Java class) LegacyIds(Transaction) (Java constructor) likeLocation (Java field) LinCon (Java class) LinCon(long, long, double, long, long, double) (Java constructor) LinearConverter (Java interface) link(EntityID) (Java method) link(EntityInterface) (Java method) linkahead module linkahead.apiutils module linkahead.cached module linkahead.common module linkahead.common.administration module linkahead.common.datatype module linkahead.common.models module linkahead.common.state module linkahead.common.timezone module linkahead.common.utils module linkahead.common.versioning module linkahead.configuration module linkahead.connection module linkahead.connection.authentication module linkahead.connection.authentication.auth_token module linkahead.connection.authentication.external_credentials_provider module linkahead.connection.authentication.input module linkahead.connection.authentication.interface module linkahead.connection.authentication.keyring module linkahead.connection.authentication.pass module linkahead.connection.authentication.plain module linkahead.connection.authentication.unauthenticated module linkahead.connection.connection module linkahead.connection.encode module linkahead.connection.interface module linkahead.connection.mockup module linkahead.connection.utils module linkahead.exceptions module linkahead.high_level_api module linkahead.queries module linkahead.utils module linkahead.utils.caosdb_admin module linkahead.utils.checkFileSystemConsistency module linkahead.utils.create_revision module linkahead.utils.email module linkahead.utils.escape module linkahead.utils.get_entity module linkahead.utils.git_utils module linkahead.utils.linkahead_admin module

linkahead.utils.plantuml module linkahead.utils.register_tests module linkahead.utils.reset_override module linkahead.utils.server_side_scripting module linkahead.version module linkahead.yamlapi module LinkAheadConnectionError LinkAheadException linkIdToEntity(EntityInterface) (Java method), [1], [2], [3] LIST (caosadvancedtools.table_json_conversion.xlsx_utils.ColumnType attribute) LIST() (in module linkahead.common.datatype) ListDatatype (Java class) ListDatatype(AbstractDatatype) (Java constructor) ListDatatypeFactory (Java class) ListElement (class in caoscrawler.structure_elements.structure_elements) ListElementConverter (class in caoscrawler.converters.converters) listKnownPermissions(ListKnownPermissionsRequest, StreamObserver) (Java method) ListRoles (Java class) listRoles(ListRolesRequest, StreamObserver) (Java method) ListRolesImpl (Java interface) ListRolesTransaction (Java class) ListUsers (Java class) listUsers(ListUsersRequest, StreamObserver) (Java method) ListUsersImpl (Java interface) ListUsersTransaction (Java class) load_cached() (built-in function) load_config() (built-in function) load_converters() (caoscrawler.crawl.Crawler method) load_definition() (caoscrawler.crawl.Crawler method) (in module caoscrawler.scanner) load_dm() (in module caosadvancedtools.collect_datamodel) load_external_record() (in module linkahead.high_level_api) load_from_yaml_definition() (caoscrawler.identifiable_adapters.CaosDBIdentifiableAdapter method) load_from_yaml_object() (caoscrawler.identifiable_adapters.CaosDBIdentifiableAdapter method) load_json_schema_from_datamodel_yaml() (in module caoscrawler.validator) loadConfig(InputStream) (Java method) LoadContainerFlagJobs (Java class) loadDataTypeSpecificJobs() (Java method) loadDataTypeSpecificJobs(EntityInterface, Transaction) (Java method) loadJobs(EntityInterface, Transaction) (Java method) loadpath() (in module caosadvancedtools.loadFiles) loadPermanentContainerJobs(Transaction) (Java method) loadStandardJobs(EntityInterface, Transaction) (Java method) LocalStorageIdentifiableAdapter (class in caoscrawler.identifiable_adapters) location (Java field) lock (Java field) locker (Java field) lockInterruptibly() (Java method) log(int, Long) (Java method) LOG_USER_VISIT (Java field) LOGGER (Java field) logger (Java field), [1], [2], [3], [4] (linkahead.connection.authentication.interface.AbstractAuthenticator attribute) (linkahead.connection.authentication.interface.CredentialsProvider attribute) LoggingInterceptor (Java class) LoggingInterceptor() (Java constructor) logHistory() (Java method), [1], [2], [3], [4], [5], [6] LOGIN (Java field) login() (linkahead.connection.authentication.auth_token.AuthTokenAuthenticator method), [1] (linkahead.connection.authentication.interface.AbstractAuthenticator method), [1] (linkahead.connection.authentication.interface.CredentialsAuthenticator method), [1] (linkahead.connection.authentication.unauthenticated.Unauthenticated method), [1] login(AuthenticationToken) (Java method) LoginFailedError logout() (Java method) (linkahead.connection.authentication.auth_token.AuthTokenAuthenticator method), [1] (linkahead.connection.authentication.interface.AbstractAuthenticator method), [1] (linkahead.connection.authentication.interface.CredentialsAuthenticator method), [1] (linkahead.connection.authentication.unauthenticated.Unauthenticated method), [1] LOGOUT_INFO (Java field) LogoutResource (Java class) logUserReturnIsKnown(long, String, String, String) (Java method), [1] LogUserVisit (Java class) LogUserVisit(long, String, String, String) (Java constructor) logUserVisit(String, String, String) (Java method) LogUserVisitImpl (Java interface) LogUserVisitTransaction (Java class) LogUserVisitTransaction(long, String, String, String) (Java constructor) looking_for() (caosadvancedtools.cfood.AbstractCFood method) (caosadvancedtools.cfood.AbstractFileCFood method) lower() (in module caosadvancedtools.collect_datamodel) (in module caoscrawler.transformers.string_transformers) LQL

M

macro_constructor() (in module caoscrawler.macros.macro_yaml_object) MacroDefinition (class in caoscrawler.macros.macro_yaml_object) MAGIC_NON_PROPERTIES (Java field) MagicTypes (Java enum) Mail (Java class) Mail(String, String, String, String, String, String) (Java constructor) Mailable (Java interface) MailFormatter (Java interface) MailHandler (Java interface) main() (in module caosadvancedtools.collect_datamodel) (in module caosadvancedtools.export_related) (in module caosadvancedtools.import_from_xml) (in module caosadvancedtools.loadFiles) (in module caosadvancedtools.models.parser) (in module caosadvancedtools.serverside.generic_analysis) (in module caosadvancedtools.table_converter) (in module caosadvancedtools.tools.strip_null_from_list) (in module caoscrawler.crawl) (in module linkahead.utils.caosdb_admin) (in module linkahead.utils.checkFileSystemConsistency) (in module linkahead.utils.reset_override) main(String[]) (Java method) make_alert() (built-in function) make_array() (in module caosadvancedtools.json_schema_exporter) make_cancel_button() (built-in function) make_checkbox_input() (built-in function) make_date_input() (built-in function) make_double_input() (built-in function) make_error_message() (built-in function) make_file_input() (built-in function) make_footer() (built-in function) make_form() (built-in function) make_form_field() (built-in function) make_form_modal() (built-in function) make_form_wrapper() (built-in function) make_generic_form() (built-in function) make_heading() (built-in function) make_integer_input() (built-in function) make_message() (built-in function) make_range_input() (built-in function) make_reference_drop_down() (built-in function) make_reference_option() (built-in function) make_required_marker() (built-in function) make_script_form() (built-in function) make_scripting_submission_button() (built-in function) make_select_input() (built-in function) make_subform() (built-in function) make_submit_button() (built-in function) make_submitting_info() (built-in function) make_success_message() (built-in function) make_text_input() (built-in function) make_uri_path() (in module linkahead.connection.utils) makeSchedule() (Java method) MakeStateMessage (Java class) MakeStateProperty (Java class) mark(int) (Java method), [1] MarkdownFileConverter (class in caoscrawler.converters.converters) markSupported() (Java method), [1] match() (caoscrawler.converters.converters.Converter method) (caoscrawler.converters.converters.DateElementConverter method) (caoscrawler.converters.converters.DatetimeElementConverter method) (caoscrawler.converters.converters.DictElementConverter method) (caoscrawler.converters.converters.DirectoryConverter method) (caoscrawler.converters.converters.ListElementConverter method) (caoscrawler.converters.converters.SimpleFileConverter method) (caoscrawler.converters.converters.TableConverter method) (caoscrawler.converters.hdf5_converter.H5NdarrayConverter method) (caoscrawler.converters.rocrate.ROCrateConverter method) (caoscrawler.converters.rocrate.ROCrateEntityConverter method) (caoscrawler.converters.xml_converter.XMLAttributeNodeConverter method) (caoscrawler.converters.xml_converter.XMLTagConverter method) (caoscrawler.converters.xml_converter.XMLTextNodeConverter method) match_item() (caosadvancedtools.cfood.AbstractCFood class method) (caosadvancedtools.cfood.AbstractFileCFood class method) match_name_and_value() (in module caoscrawler.converters.converters) match_properties() (caoscrawler.converters.converters.Converter method) MatchFileProp (Java class) matchIdPattern(EntityID) (Java method) matchIdPattern(String) (Java method), [1], [2], [3], [4], [5], [6] matching_groups (caosadvancedtools.cfood.CMeal attribute) MAX_LENGTH (Java field) Measurement (Java class) Measurement(String, long, int) (Java constructor) measurements (Java field) merge(TransactionBenchmark, TransactionBenchmark) (Java method) merge_entities() (in module linkahead.apiutils) merge_schemas() (in module caosadvancedtools.json_schema_exporter) message (caoscrawler.exceptions.ImpossibleMergeError attribute) Message (class in linkahead.common.models) (Java class) Message(MessageCode, String) (Java constructor) Message(MessageCode, String, String, MessageType) (Java constructor) Message(MessageType, MessageCode, String) (Java constructor) Message(MessageType, MessageCode, String, String) (Java constructor) Message(MessageType, String) (Java constructor) Message(String) (Java constructor) Message(String, MessageCode) (Java constructor) Message(String, MessageCode, String) (Java constructor) Message(String, MessageCode, String, String) (Java constructor) Message(String, String, String) (Java constructor) Messages (class in linkahead.common.models) messages (linkahead.common.models.Info attribute) (linkahead.common.models.Query attribute) MessageType (Java enum) metadata (caoscrawler.converters.converters.Converter attribute) MetadataFileMissing MIN_PRIORITY_BITSET (Java field) minute (Java field) MismatchingEntitiesError missing (caosadvancedtools.datamodel_problems.DataModelProblems attribute) MissingIdentifyingProperty MissingImport() (in module caoscrawler.utils) MissingRecordType MissingReferencingEntityError MockUpResponse (class in linkahead.connection.mockup) MockUpServerConnection (class in linkahead.connection.mockup) Mode (Java enum) module caosadvancedtools caosadvancedtools.cache caosadvancedtools.cfood caosadvancedtools.cfoods caosadvancedtools.cfoods.h5 caosadvancedtools.collect_datamodel caosadvancedtools.crawler caosadvancedtools.datainconsistency caosadvancedtools.datamodel_problems caosadvancedtools.example_cfood caosadvancedtools.export_related caosadvancedtools.guard caosadvancedtools.import_from_xml caosadvancedtools.json_schema_exporter caosadvancedtools.loadFiles caosadvancedtools.models caosadvancedtools.models.data_model caosadvancedtools.models.parser caosadvancedtools.pandoc_header_tools caosadvancedtools.read_md_header caosadvancedtools.scifolder caosadvancedtools.scifolder.analysis_cfood caosadvancedtools.scifolder.experiment_cfood caosadvancedtools.scifolder.generic_pattern caosadvancedtools.scifolder.publication_cfood caosadvancedtools.scifolder.result_table_cfood caosadvancedtools.scifolder.simulation_cfood caosadvancedtools.scifolder.software_cfood caosadvancedtools.scifolder.utils caosadvancedtools.scifolder.withreadme caosadvancedtools.serverside caosadvancedtools.serverside.generic_analysis caosadvancedtools.serverside.helper caosadvancedtools.serverside.logging caosadvancedtools.serverside.utils caosadvancedtools.structure_mapping caosadvancedtools.suppressKnown caosadvancedtools.table_converter caosadvancedtools.table_export caosadvancedtools.table_importer caosadvancedtools.table_json_conversion caosadvancedtools.table_json_conversion.convert caosadvancedtools.table_json_conversion.export_import_xlsx caosadvancedtools.table_json_conversion.fill_xlsx caosadvancedtools.table_json_conversion.table_generator caosadvancedtools.table_json_conversion.xlsx_utils caosadvancedtools.tools caosadvancedtools.tools.strip_null_from_list caosadvancedtools.tools.test caosadvancedtools.utils caosadvancedtools.version caosadvancedtools.webui_formatter caoscrawler caoscrawler.authorize caoscrawler.config caoscrawler.converters caoscrawler.converters.converters caoscrawler.converters.hdf5_converter caoscrawler.converters.rocrate caoscrawler.converters.spss caoscrawler.converters.transformer_converters caoscrawler.converters.xml_converter caoscrawler.converters.zipfile_converter caoscrawler.crawl caoscrawler.debug_tree caoscrawler.exceptions caoscrawler.identifiable caoscrawler.identifiable_adapters caoscrawler.logging caoscrawler.macros caoscrawler.macros.macro_yaml_object caoscrawler.scanner caoscrawler.scripts caoscrawler.scripts.generators caoscrawler.stores caoscrawler.structure_elements caoscrawler.structure_elements.rocrate_structure_elements caoscrawler.structure_elements.structure_elements caoscrawler.sync_graph caoscrawler.sync_node caoscrawler.transformer_functions caoscrawler.transformers caoscrawler.transformers.cast_and_parse_transformers caoscrawler.transformers.string_transformers caoscrawler.transformers.substitution_transformers caoscrawler.utils caoscrawler.validator caoscrawler.version linkahead linkahead.apiutils linkahead.cached linkahead.common linkahead.common.administration linkahead.common.datatype linkahead.common.models linkahead.common.state linkahead.common.timezone linkahead.common.utils linkahead.common.versioning linkahead.configuration linkahead.connection linkahead.connection.authentication linkahead.connection.authentication.auth_token linkahead.connection.authentication.external_credentials_provider linkahead.connection.authentication.input linkahead.connection.authentication.interface linkahead.connection.authentication.keyring linkahead.connection.authentication.pass linkahead.connection.authentication.plain linkahead.connection.authentication.unauthenticated linkahead.connection.connection linkahead.connection.encode linkahead.connection.interface linkahead.connection.mockup linkahead.connection.utils linkahead.exceptions linkahead.high_level_api linkahead.queries linkahead.utils linkahead.utils.caosdb_admin linkahead.utils.checkFileSystemConsistency linkahead.utils.create_revision linkahead.utils.email linkahead.utils.escape linkahead.utils.get_entity linkahead.utils.git_utils linkahead.utils.linkahead_admin linkahead.utils.plantuml linkahead.utils.register_tests linkahead.utils.reset_override linkahead.utils.server_side_scripting linkahead.version linkahead.yamlapi

month (Java field) msg (linkahead.exceptions.ConfigurationError attribute) (linkahead.exceptions.EntityError attribute) multipart_encode() (in module linkahead.connection.encode) MultipartParam (class in linkahead.connection.encode) MULTIPLE_CHOICE (caosadvancedtools.table_json_conversion.xlsx_utils.ColumnType attribute) multiRetrieveEntityACL(MultiRetrieveEntityACLRequest, StreamObserver) (Java method) multiTransaction(MultiTransactionRequest, StreamObserver) (Java method) multiUpdateEntityACL(MultiUpdateEntityACLRequest, StreamObserver) (Java method) MySQLDeleteEntityProperties (Java class) MySQLDeleteEntityProperties(Access) (Java constructor) MySQLDeletePassword (Java class) MySQLDeletePassword(Access) (Java constructor) MySQLDeleteRole (Java class) MySQLDeleteRole(Access) (Java constructor) MySQLDeleteSparseEntity (Java class) MySQLDeleteSparseEntity(Access) (Java constructor) MySQLDeleteUser (Java class) MySQLDeleteUser(Access) (Java constructor) MySQLGetAllNames (Java class) MySQLGetAllNames(Access) (Java constructor) MySQLGetDependentEntities (Java class) MySQLGetDependentEntities(Access) (Java constructor) MySQLGetFileRecordByPath (Java class) MySQLGetFileRecordByPath(Access) (Java constructor) MySQLGetIDByName (Java class) MySQLGetIDByName(Access) (Java constructor) MySQLGetInfo (Java class) MySQLGetInfo(Access) (Java constructor) MySQLGetUpdateableChecksums (Java class) MySQLGetUpdateableChecksums(Access) (Java constructor) MySQLHelper (Java class) MySQLInsertEntityDatatype (Java class) MySQLInsertEntityDatatype(Access) (Java constructor) MySQLInsertEntityProperties (Java class) MySQLInsertEntityProperties(Access) (Java constructor) MySQLInsertLinCon (Java class) MySQLInsertLinCon(Access) (Java constructor) MySQLInsertParents (Java class) MySQLInsertParents(Access) (Java constructor) MySQLInsertRole (Java class) MySQLInsertRole(Access) (Java constructor) MySQLInsertSparseEntity (Java class) MySQLInsertSparseEntity(Access) (Java constructor) MySQLInsertTransactionHistory (Java class) MySQLInsertTransactionHistory(Access) (Java constructor) MySQLIsSubType (Java class) MySQLIsSubType(Access) (Java constructor) MySQLListRoles (Java class) MySQLListRoles(Access) (Java constructor) MySQLListUsers (Java class) MySQLListUsers(Access) (Java constructor) MySQLLogUserVisit (Java class) MySQLLogUserVisit(Access) (Java constructor) MySQLRetrieveAll (Java class) MySQLRetrieveAll(Access) (Java constructor) MySQLRetrieveAllUncheckedFiles (Java class) MySQLRetrieveAllUncheckedFiles(Access) (Java constructor) MySQLRetrieveCurrentMaxId (Java class) MySQLRetrieveCurrentMaxId(Access) (Java constructor) MySQLRetrieveDatatypes (Java class) MySQLRetrieveDatatypes(Access) (Java constructor) MySQLRetrieveEntityACL (Java class) MySQLRetrieveEntityACL(Access) (Java constructor) MySQLRetrieveParents (Java class) MySQLRetrieveParents(Access) (Java constructor) MySQLRetrievePasswordValidator (Java class) MySQLRetrievePasswordValidator(Access) (Java constructor) MySQLRetrievePermissionRules (Java class) MySQLRetrievePermissionRules(Access) (Java constructor) MySQLRetrieveProperties (Java class) MySQLRetrieveProperties(Access) (Java constructor) MySQLRetrieveQueryTemplateDefinition (Java class) MySQLRetrieveQueryTemplateDefinition(Access) (Java constructor) MySQLRetrieveRole (Java class) MySQLRetrieveRole(Access) (Java constructor) MySQLRetrieveSparseEntity (Java class) MySQLRetrieveSparseEntity(Access) (Java constructor) MySQLRetrieveUser (Java class) MySQLRetrieveUser(Access) (Java constructor) MySQLRetrieveVersionHistory (Java class) MySQLRetrieveVersionHistory(Access) (Java constructor) MySQLSetFileCheckedTimestampImpl (Java class) MySQLSetFileCheckedTimestampImpl(Access) (Java constructor) MySQLSetFileChecksum (Java class) MySQLSetFileChecksum(Access) (Java constructor) MySQLSetPassword (Java class) MySQLSetPassword(Access) (Java constructor) MySQLSetPermissionRules (Java class) MySQLSetPermissionRules(Access) (Java constructor) MySQLSetQueryTemplateDefinition (Java class) MySQLSetQueryTemplateDefinition(Access) (Java constructor) MySQLSyncStats (Java class) MySQLSyncStats(Access) (Java constructor) MySQLTransaction (Java class) MySQLTransaction(Access) (Java constructor) MySQLUpdateSparseEntity (Java class) MySQLUpdateSparseEntity(Access) (Java constructor) MySQLUpdateUser (Java class) MySQLUpdateUser(Access) (Java constructor) MySQLUpdateUserRoles (Java class) MySQLUpdateUserRoles(Access) (Java constructor)

N

name (caoscrawler.macros.macro_yaml_object.MacroDefinition attribute) NAME (Java field) name (Java field), [1], [2], [3], [4], [5], [6] NAME (linkahead.cached.AccessType attribute) name (linkahead.common.models.Entity property) (linkahead.common.models.UserInfo attribute) (linkahead.common.state.Transition property) (linkahead.high_level_api.CaosDBPythonEntity property) (linkahead.high_level_api.CaosDBPythonUnresolvedParent attribute) name() (Java method) name_beautifier() (caosadvancedtools.scifolder.analysis_cfood.AnalysisCFood static method) (caosadvancedtools.scifolder.experiment_cfood.ExperimentCFood static method) (caosadvancedtools.scifolder.result_table_cfood.ResultTableCFood static method) name_data (Java field) NAME_PROPERTIES_MUST_BE_TEXT (Java field) NameCollector (class in caosadvancedtools.serverside.helper) nanos (Java field) nanosecond (Java field) Negation (Java class) Negation(EntityFilterInterface) (Java constructor) NegationFactory (Java class) NegationFactory() (Java constructor) NEGATIVE (Java field) neq_currentTransactor() (Java method) neq_foreignTransactor(Query.Pattern) (Java method)

neq_foreignTransactor(String) (Java method) new_high_level_entity() (in module linkahead.high_level_api) new_record() (in module linkahead.apiutils) next() (Java method), [1] next_level() (caosadvancedtools.table_json_conversion.fill_xlsx.TemplateFiller.Context method) next_row_index() (in module caosadvancedtools.table_json_conversion.xlsx_utils) NO_FILE_REPRESENTATION_SUBMITTED (Java field) NO_SUCH_ENTITY_ROLE(String) (Java method) NoCache (Java class) NONE (Java field), [1] NoneElement (class in caoscrawler.structure_elements.structure_elements) NONEXISTENT (Java field) NoOpCache (Java class) NoOpListener (Java class) normalize() (Java method), [1] normalize_sheet_titles() (caosadvancedtools.table_json_conversion.table_generator.XLSXTemplateGenerator static method) NoSuchRoleException (Java class) NoSuchRoleException(String) (Java constructor) notifyObserver(String, Observable) (Java method), [1], [2], [3], [4], [5], [6], [7] notifyObservers(String) (Java method), [1], [2], [3] NoValidHeader noWellFormedNess() (Java method) null_data (Java field) NullPrintStream (Java class) NullPrintStream() (Java constructor) NUMBER_PATTERN (Java field)

O

OBL_IMPORTANCE_FLAG_KEY (Java field) OBLIGATORY (Java field), [1] OBLIGATORY_PROPERTY_MISSING (Java field) Observable (Java interface) Observer (Java interface) offset (linkahead.common.timezone.TimeZone attribute) OK (Java field) ok(Document) (Java method) ok(Element) (Java method) on_request() (linkahead.connection.authentication.interface.AbstractAuthenticator method), [1] (linkahead.connection.authentication.unauthenticated.Unauthenticated method), [1] on_response() (linkahead.connection.authentication.interface.AbstractAuthenticator method), [1] (linkahead.connection.authentication.unauthenticated.Unauthenticated method), [1] onCompleted() (Java method) onError(Throwable) (Java method) ONETIME (Java field) OneTimeAuthenticationToken (Java class) OneTimeAuthenticationToken(Principal, long, long, String, String, String[], String[], long, long) (Java constructor) OneTimeAuthenticationToken(Principal, long, String[], String[], Long, Long) (Java constructor) OneTimeTokenConsumedInfo (Java class) OneTimeTokenConsumedInfo(OneTimeAuthenticationToken) (Java constructor) OneTimeTokenToFile (Java class) OneTimeTokenToFile() (Java constructor) onNext(FileUploadRequest) (Java method) optimize() (Java method) org.caosdb.datetime (package) org.caosdb.server (package) org.caosdb.server.accessControl (package) org.caosdb.server.caching (package) org.caosdb.server.database (package) org.caosdb.server.database.access (package) org.caosdb.server.database.backend.implementation.MySQL (package)

org.caosdb.server.database.backend.implementation.UnixFileSystem (package) org.caosdb.server.database.backend.interfaces (package) org.caosdb.server.database.backend.transaction (package) org.caosdb.server.database.exceptions (package) org.caosdb.server.database.misc (package) org.caosdb.server.database.proto (package) org.caosdb.server.datatype (package) org.caosdb.server.entity (package) org.caosdb.server.entity.container (package) org.caosdb.server.entity.wrapper (package) org.caosdb.server.entity.xml (package) org.caosdb.server.grpc (package) org.caosdb.server.jobs (package) org.caosdb.server.jobs.core (package) org.caosdb.server.logging (package) org.caosdb.server.logging.log4j (package) org.caosdb.server.permissions (package) org.caosdb.server.query (package) org.caosdb.server.resource (package) org.caosdb.server.resource.transaction (package) org.caosdb.server.scripting (package) org.caosdb.server.transaction (package) org.caosdb.server.utils (package) org.caosdb.server.utils.mail (package) org.caosdb.unit (package) ORPHANED_FILE_WARNING (Java field) OTHER_ROLE (Java field) output(OneTimeAuthenticationToken, File) (Java method) output(OneTimeAuthenticationToken, String) (Java method) overrideType (C++ function) OWNER_BITSET (Java field) OWNER_ROLE (Java field)

P

p (Java field) p2s() (in module caosadvancedtools.table_json_conversion.xlsx_utils) Paging (Java class), [1] Paging(int, int) (Java constructor) PagingConsistencyError Pam (Java class) PamScriptCaller (Java interface) params (caoscrawler.macros.macro_yaml_object.MacroDefinition attribute) Parent (class in linkahead.common.models) (Java class) Parent(EntityInterface) (Java constructor) PARENT_DUPLICATES_ERROR (Java field) PARENT_DUPLICATES_WARNING (Java field) parent_in_list() (in module caoscrawler.sync_node) ParentContainer (Java class) ParentContainer(EntityInterface) (Java constructor) ParentList (class in linkahead.common.models) parents (Java field) ParentToElementStrategy (Java class) ParentToElementStrategy() (Java constructor) parse() (Java method) parse(boolean) (Java method) parse(Element) (Java method) parse(InputStream) (Java method) parse(Map) (Java method) parse(Object[]) (Java method), [1] parse(String) (Java method), [1], [2] parse_args() (in module caoscrawler.authorize) (in module caoscrawler.crawl) parse_arguments() (in module caosadvancedtools.serverside.helper) parse_auth_token() (in module linkahead.connection.utils) parse_model_from_json_schema() (caosadvancedtools.models.parser.JsonSchemaParser method) (in module caosadvancedtools.models.parser) parse_model_from_string() (caosadvancedtools.models.parser.Parser method) (in module caosadvancedtools.models.parser) parse_model_from_yaml() (caosadvancedtools.models.parser.Parser method) (in module caosadvancedtools.models.parser) parse_multiple_choice() (in module caosadvancedtools.table_json_conversion.xlsx_utils) parse_responsibles() (in module caosadvancedtools.scifolder.utils) parse_script_result() (built-in function) parse_url() (in module linkahead.connection.utils) parse_xml() (in module linkahead.common.models) (linkahead.common.models.ACL method) (linkahead.common.models.Permissions method) parseArgs (Java field) parseEntity(InputStream) (Java method) parseEntity(Representation) (Java method) parseEntityResultSet(ResultSet) (Java method) ParseErrorsInHeader parseFromElement(Element) (Java method), [1], [2], [3] parseFromProtoProperties(EntityInterface, List) (Java method) parseFromString(String) (Java method) parseIdVersion(String) (Java method) parseNameRoleACL(ResultSet) (Java method) parseOverrides(List, ResultSet) (Java method) parseParentResultSet(ResultSet) (Java method) parsePropertyResultset(ResultSet) (Java method) parseProtoProperty(ProtoProperty) (Java method) PARSER (caosadvancedtools.table_json_conversion.convert.XLSXConverter attribute) Parser (class in caosadvancedtools.models.parser) parseReference(EntityID) (Java method) parseReference(Object) (Java method) parseSessionTokenCookie(Cookie) (Java method) parseSparseEntity(SparseEntity) (Java method), [1], [2] ParseUnit (Java class) parseValue() (Java method), [1], [2] parseValue(Object) (Java method), [1], [2], [3], [4], [5], [6], [7] parseValue(String) (Java method) PARSING_FAILED (Java field) ParsingError (Java class) ParsingError(String, String) (Java constructor) ParsingError(String, String, Integer, Integer) (Java constructor) ParsingException (Java class) ParsingException(String) (Java constructor) PARTHOOD (Java field) PassCaller (class in linkahead.connection.authentication.pass) password (Java field) (linkahead.connection.authentication.external_credentials_provider.ExternalCredentialsProvider attribute) (linkahead.connection.authentication.external_credentials_provider.ExternalCredentialsProvider property) (linkahead.connection.authentication.input.InputCredentialsProvider attribute) (linkahead.connection.authentication.input.InputCredentialsProvider property) (linkahead.connection.authentication.interface.CredentialsProvider attribute) (linkahead.connection.authentication.interface.CredentialsProvider property) (linkahead.connection.authentication.keyring.KeyringCaller attribute) (linkahead.connection.authentication.pass.PassCaller attribute) (linkahead.connection.authentication.plain.PlainTextCredentialsProvider attribute) (linkahead.connection.authentication.plain.PlainTextCredentialsProvider property) PASSWORD_TOO_WEAK(String) (Java method) PATH (caosadvancedtools.table_json_conversion.xlsx_utils.RowType attribute) (linkahead.cached.AccessType attribute) path (linkahead.common.models.Entity property) (linkahead.high_level_api.CaosDBPythonEntity property) PATH_PARAMETER (Java field) pattern (caoscrawler.converters.converters.CrawlerTemplate attribute) Pattern (Java class) PATTERN (Java field) Pattern(String, int) (Java constructor) pattern_matching (Java field) pause() (Java method) PEPPER (Java field) Permission (class in linkahead.common.models) (Java class) permission (Java field) Permission(String, String) (Java constructor) PERMISSION_ACCESS_SERVER_PROPERTIES (Java field) PERMISSION_ASSIGN_ROLE(String) (Java method) PERMISSION_DELETE_ROLE(String) (Java method) PERMISSION_DELETE_USER(String, String) (Java method) PERMISSION_EXECUTION(String) (Java method) PERMISSION_INSERT_ROLE() (Java method) PERMISSION_INSERT_USER(String) (Java method) PERMISSION_RETRIEVE_ROLE_DESCRIPTION(String) (Java method)

PERMISSION_RETRIEVE_ROLE_PERMISSIONS(String) (Java method) PERMISSION_RETRIEVE_SERVERLOGS (Java field) PERMISSION_RETRIEVE_USER_INFO(String, String) (Java method) PERMISSION_RETRIEVE_USER_ROLES(String, String) (Java method) permission_rules (Java field) PERMISSION_STATE_ASSIGN (Java field) PERMISSION_STATE_FORCE_FINAL (Java field) PERMISSION_STATE_TRANSION (Java field) PERMISSION_STATE_UNASSIGN (Java field) PERMISSION_UPDATE_ROLE_DESCRIPTION(String) (Java method) PERMISSION_UPDATE_ROLE_PERMISSIONS(String) (Java method) PERMISSION_UPDATE_USER_EMAIL(String, String) (Java method) PERMISSION_UPDATE_USER_ENTITY(String, String) (Java method) PERMISSION_UPDATE_USER_PASSWORD(String, String) (Java method) PERMISSION_UPDATE_USER_ROLES(String, String) (Java method) PERMISSION_UPDATE_USER_STATUS(String, String) (Java method) PermissionRule (class in linkahead.common.administration) (Java class) PermissionRule(boolean, boolean, String) (Java constructor) PermissionRule(String, String, String) (Java constructor) PermissionRulesResource (Java class) Permissions (class in linkahead.common.models) permissions (Java field), [1] (linkahead.common.models.Entity attribute) (linkahead.common.models.QueryTemplate attribute) PickUp (Java class) pickUp(String, String) (Java method) PlainTextCredentialsProvider (class in linkahead.connection.authentication.plain) PLEASE_LOG_IN (Java field) PLEASE_SET_A_PASSWORD (Java field) pname (caoscrawler.exceptions.ImpossibleMergeError attribute) POSITIVE (Java field) POST_CHECK (Java field) POST_TRANSACTION (Java field) postCheck() (Java method), [1], [2], [3], [4], [5], [6] postTransaction() (Java method), [1], [2], [3], [4], [5], [6] postXml() (built-in function) POV (Java class) POV filter POV(Query.Pattern, String, String, String) (Java constructor) PRE_CHECK (Java field) PRE_TRANSACTION (Java field) preCheck() (Java method), [1], [2], [3], [4], [5], [6] predecessors (linkahead.common.versioning.Version attribute) preLoad(int) (Java method) prepare_csv_export() (caosadvancedtools.table_export.BaseTableExporter method) prepareStatement(String) (Java method), [1] preTransaction() (Java method), [1], [2], [3], [4], [5] Principal (Java class) PRINCIPAL (Java field) Principal(Principal) (Java constructor) Principal(String, String) (Java constructor) Principal(String[]) (Java constructor) print(String) (Java method) print_bootstrap() (in module caosadvancedtools.serverside.helper) print_error() (in module caosadvancedtools.serverside.helper) print_info() (in module caosadvancedtools.serverside.helper) print_success() (in module caosadvancedtools.serverside.helper) print_warning() (in module caosadvancedtools.serverside.helper) println(String) (Java method) printSettings(ConnectionPool) (Java method) printStatus() (Java method) printTable(Connection, String, PrintStream) (Java method) printVar(Connection, String, PrintStream) (Java method) proceed_callback() (built-in function) process() (in module linkahead.yamlapi) process(HashMap) (Java method), [1], [2] process(HashSet) (Java method) process(LinkedList) (Java method), [1] process(ProtoUser) (Java method) process(Role) (Java method) process(SparseEntity) (Java method), [1] process(V) (Java method) process(VerySparseEntity) (Java method) ProcessNameProperties (Java class) ProhibitedException Project (caosadvancedtools.scifolder.withreadme.DataModel attribute) propertiesCount (Java field) PropertiesFromDictConverter (class in caoscrawler.converters.converters) Property (class in linkahead.common.models) (Java class) PROPERTY (Java field) Property (Java field) Property(EntityInterface) (Java constructor) property_exists() (linkahead.high_level_api.CaosDBPythonEntity method) PROPERTY_HAS_NO_DATATYPE (Java field) PROPERTY_HAS_NO_UNIT (Java field) property_in_list() (in module caoscrawler.sync_node) property_name_re (caosadvancedtools.scifolder.result_table_cfood.ResultTableCFood attribute) PROPERTY_WITH_DATATYPE_OVERRIDE (Java field) PROPERTY_WITH_DESC_OVERRIDE (Java field) PROPERTY_WITH_NAME_OVERRIDE (Java field) PropertyContainer (Java class) PropertyContainer(EntityInterface) (Java constructor) PropertyList (class in linkahead.common.models) PropertyToElementStrategy (Java class) PropertyToElementStrategy() (Java constructor) ProtoGroup (Java class) ProtoInfo (Java class) ProtoProperty (Java class) ProtoUser (Java class) ProtoUser() (Java constructor) prune_none_objects() (in module caosadvancedtools.table_json_conversion.xlsx_utils) Publication (caosadvancedtools.scifolder.withreadme.DataModel attribute) PublicationCFood (class in caosadvancedtools.scifolder.publication_cfood) purge_from_json() (in module caosadvancedtools.tools.test) purposes (Java field) put(Object, Object) (Java method) put(UserSource) (Java method) put_in_container() (in module caosadvancedtools.cache) putAll(Map) (Java method) putFilesInWorkingDir(Collection) (Java method) putFlag() (linkahead.common.models.Query method)

Q

q (linkahead.common.models.Query attribute) QUALIFIED (Java field) Query (class in linkahead.common.models) (Java class) QUERY (linkahead.cached.AccessType attribute) query (linkahead.common.models.Container attribute) query() (in module linkahead.high_level_api) (in module linkahead.queries) Query(String) (Java constructor) Query(String, Subject) (Java constructor) Query(String, Subject, TransactionContainer, EntityTransactionInterface, Access) (Java constructor) Query(String, Transaction) (Java constructor) QUERY_EXCEPTION (Java field) query_files() (caosadvancedtools.crawler.FileCrawler static method) query_from() (in module linkahead.queries) query_from_eid() (in module linkahead.queries)

query_from_name() (in module linkahead.queries) query_from_path() (in module linkahead.queries) QUERY_PARSING_ERROR (Java field) QUERY_PARSING_ERROR(String) (Java method) QUERY_TEMPLATE_HAS_NO_QUERY_DEFINITION (Java field) QUERY_TEMPLATE_WITH_COUNT (Java field) QUERY_TEMPLATE_WITH_SELECT (Java field) QueryException (Java class) QueryException(String) (Java constructor) QueryException(Throwable) (Java constructor) QueryInterface (Java interface) QueryNotUniqueError QueryTemplate (class in linkahead.common.models) QUERYTEMPLATE (Java field) QueryTemplate (Java field) QueryType (class in linkahead.queries) quote() (in module linkahead.connection.utils)

R

raise_errors() (in module linkahead.common.models) re_from_extensions() (caosadvancedtools.cfood.AbstractFileCFood static method) read() (Java method), [1] (linkahead.connection.encode.ReadableMultiparts method) (linkahead.connection.interface.CaosDBHTTPResponse method) (linkahead.connection.mockup.MockUpResponse method) read(byte[]) (Java method) read(byte[], int, int) (Java method) read(ByteBuffer) (Java method) read(char[]) (Java method) read(char[], int, int) (Java method) read(CharBuffer) (Java method) read(String) (Java method), [1] read_column_types() (in module caoscrawler.converters.spss) read_field_as_list() (in module caosadvancedtools.utils) read_file() (caosadvancedtools.table_importer.CSVImporter method) (caosadvancedtools.table_importer.TableImporter method) (caosadvancedtools.table_importer.TSVImporter method) (caosadvancedtools.table_importer.XLSImporter method) read_or_dict() (in module caosadvancedtools.table_json_conversion.xlsx_utils) read_xls() (caosadvancedtools.table_importer.XLSImporter method) ReadableMultiparts (class in linkahead.connection.encode) ReadAccessSemaphore (Java class) ReadAccessSemaphore() (Java constructor) readBuildNumber() (Java method) ready() (Java method) real_id (Java field), [1] realm (Java field), [1], [2] (linkahead.common.models.UserInfo attribute) (linkahead.common.versioning.Version attribute) REALM_NAME (Java field) REALM_PARAMETER (Java field) REALM_SEPARATOR (Java field) RealmUsernamePasswordToken (Java class) RealmUsernamePasswordToken(String, String, String) (Java constructor) RECOMMENDED (Java field), [1] Record (class in linkahead.common.models) RECORD (Java field) Record (Java field) RECORD_WITH_VALUE_ERROR(String) (Java method) records_from_json() (in module caosadvancedtools.table_json_conversion.convert) recordsCount (Java field) RecordStore (class in caoscrawler.stores) RecordType (class in linkahead.common.models) RECORDTYPE (Java field) RecordType (Java field) recordtype_is_child_of() (in module caosadvancedtools.serverside.helper) recordtype_to_json_schema() (caosadvancedtools.json_schema_exporter.JsonSchemaExporter method) (in module caosadvancedtools.json_schema_exporter) recordtypes_to_plantuml_string() (in module linkahead.utils.plantuml) recordTypesCount (Java field) recursively_collect_related() (in module caosadvancedtools.export_related) reference_data (Java field) reference_files_from_header() (caosadvancedtools.scifolder.withreadme.WithREADME method) reference_included_records() (caosadvancedtools.scifolder.withreadme.WithREADME method) REFERENCE_IS_NOT_ALLOWED_BY_DATATYPE (Java field) REFERENCE_NAME_DUPLICATES (Java field) reference_records_corresponding_to_files() (in module caosadvancedtools.scifolder.utils) REFERENCED_ENTITY_DOES_NOT_EXIST (Java field) ReferenceDatatype (Java class) ReferenceDatatype2 (Java class) ReferenceDatatype2(EntityID) (Java constructor) ReferenceDatatype2(Object) (Java constructor) ReferenceValue (Java class) ReferenceValue(EntityID) (Java constructor) ReferenceValue(EntityID, String) (Java constructor) ReferenceValue(EntityInterface, boolean) (Java constructor) ReferenceValue(String) (Java constructor) ReferenceValue(String, String) (Java constructor) referencing_entity_has_appropriate_type() (caoscrawler.identifiable_adapters.IdentifiableAdapter static method) regex_replace() (in module caoscrawler.transformers.string_transformers) REGEX_SPLIT_CSV (Java field) register() (built-in function) register_identifiable() (caoscrawler.identifiable_adapters.CaosDBIdentifiableAdapter method) (caoscrawler.identifiable_adapters.LocalStorageIdentifiableAdapter method) registerFileDownload(FileTransmissionSettings) (Java method), [1] registerFileDownload(String, FileProperties) (Java method), [1] registerFileUpload() (Java method) registerFileUpload(RegisterFileUploadRequest, StreamObserver) (Java method) registerReplacementId(int) (Java method) registerReplacementIds (C++ function) Releasable (Java interface) release() (Java method), [1], [2], [3], [4], [5], [6] releaseRunAs() (Java method) remove() (Java method) (linkahead.common.models.Container method) (linkahead.common.models.Messages method) (linkahead.common.models.ParentList method) (linkahead.common.models.PropertyList method) remove(EntityACL) (Java method) remove(Object) (Java method) remove_parent() (linkahead.common.models.Entity method) remove_property() (caosadvancedtools.cfood.AbstractCFood static method) (linkahead.common.models.Entity method) remove_unnecessary_updates() (caoscrawler.crawl.Crawler static method) remove_value_from_property() (linkahead.common.models.Entity method) removeAllObservers() (Java method) removeAllWaitingNotifications() (built-in function) removeCached(EntityID) (Java method), [1] removeCached(EntityInterface) (Java method), [1] removeCached(Principal) (Java method) removeCached(Set) (Java method) removeCached(String) (Java method), [1], [2], [3], [4] RemoveDuplicates (Java class) removeFlag() (linkahead.common.models.Query method) removeMessage(Message) (Java method), [1], [2] removeObserver(Observer) (Java method) removeOnCleanUp(String) (Java method) removeprefix() (in module caoscrawler.transformers.string_transformers) removesuffix() (in module caoscrawler.transformers.string_transformers) rename(File, File) (Java method) replace() (in module caoscrawler.transformers.string_transformers) replace_entities_with_ids() (caoscrawler.crawl.Crawler method) replace_name_with_referenced_entity_id() (caoscrawler.crawl.Crawler static method) replace_path_prefix() (in module caosadvancedtools.utils) replace_variables() (in module caoscrawler.converters.converters) ReplacedProperty (Java class) ReplacedProperty(Property) (Java constructor) REPLACEMENT (Java field) replacement (Java field) ReplacementStatus (Java enum) reportAmbiguity(Parser, DFA, int, int, boolean, BitSet, ATNConfigSet) (Java method) reportAttemptingFullContext(Parser, DFA, int, int, BitSet, ATNConfigSet) (Java method) reportContextSensitivity(Parser, DFA, int, int, int, ATNConfigSet) (Java method) representer_ordereddict() (in module caoscrawler.validator) request (Java field) request() (linkahead.connection.interface.CaosDBServerConnection method) (linkahead.connection.mockup.MockUpServerConnection method) REQUEST_BODY_EMPTY (Java field) REQUEST_BODY_NOT_WELLFORMED (Java field) REQUEST_DOESNT_CONTAIN_EXPECTED_ELEMENTS (Java field) request_entity (Java field) REQUEST_ERRORS_LOGGER (Java field) request_headers (Java field) REQUEST_TIME_LOGGER (Java field) RequestErrorLogMessage (Java class) RequestErrorLogMessage() (Java constructor) RequestErrorLogMessage(Request, Response) (Java constructor) REQUIRED_BY_PERSISTENT_ENTITY (Java field) REQUIRED_BY_UNQUALIFIED (Java field) requiresPatternMatching(String) (Java method) ReReadableByteChannel (Java class) ReReadableByteChannel(ReReadableRepresentation, ReadableByteChannel) (Java constructor) ReReadableInputStream (Java class) ReReadableInputStream(ReReadableRepresentation, InputStream) (Java constructor) ReReadableReader (Java class) ReReadableReader(ReReadableRepresentation, Reader) (Java constructor) ReReadableRepresentation (Java class) ReReadableRepresentation(Representation) (Java constructor) reserve() (Java method) reserveWriteAccess(WriteTransactionInterface) (Java method) reset() (caosadvancedtools.suppressKnown.SuppressKnown method) (Java method), [1] (linkahead.connection.encode.MultipartParam method) reset_overrides() (in module linkahead.utils.reset_override) reset_overrides_all() (in module linkahead.utils.reset_override) resetConfig() (Java method) resolve(EntityID) (Java method) resolve(EntityID, String, String) (Java method) resolve(EntityID, String, Version) (Java method) resolve(EntityInterface) (Java method) resolve(String) (Java method) resolve(TransactionContainer) (Java method) resolve_reference() (in module linkahead.apiutils) resolve_references() (linkahead.high_level_api.CaosDBPythonEntity method) resolveAll() (Java method) ResolveNames (Java class) resolveParents() (Java method) resolvePermissionsInRole(Set) (Java method) resolveRoles(Principal) (Java method)

resolveRoles(String, String) (Java method) resolveRolesForUsername(String) (Java method), [1], [2] response (Java field) response_entity (Java field) response_headers (Java field) responsible (caosadvancedtools.scifolder.withreadme.DataModel attribute) ResponsibleAgent (Java interface) restore_state() (caoscrawler.identifiable_adapters.LocalStorageIdentifiableAdapter method) results (caosadvancedtools.scifolder.withreadme.DataModel attribute) (linkahead.common.models.Query attribute) resultSet (Java field) ResultSetIterator (Java class) ResultSetIterator(ResultSet) (Java constructor) ResultTableCFood (class in caosadvancedtools.scifolder.result_table_cfood) RETRIEVE (caoscrawler.crawl.SecurityMode attribute) Retrieve (Java class) retrieve() (linkahead.common.models.Container method) (linkahead.common.models.Entity method) (linkahead.common.models.QueryTemplate method) retrieve(EntityID, String) (Java method), [1] retrieve(MultiTransactionRequest) (Java method) Retrieve(RetrieveContainer) (Java constructor) retrieve(String) (Java method), [1] RETRIEVE_ACL (Java field) retrieve_acl() (linkahead.common.models.Entity method) retrieve_entities_with_ids() (in module linkahead.apiutils) RETRIEVE_ENTITY (Java field) retrieve_entity_with_id() (in module linkahead.apiutils) RETRIEVE_FILE (Java field) RETRIEVE_HISTORY (Java field) retrieve_history() (built-in function) retrieve_identified_record_for_identifiable() (caoscrawler.identifiable_adapters.CaosDBIdentifiableAdapter method) (caoscrawler.identifiable_adapters.IdentifiableAdapter method) (caoscrawler.identifiable_adapters.LocalStorageIdentifiableAdapter method) RETRIEVE_OWNER (Java field) retrieve_substructure() (in module linkahead.utils.plantuml) RetrieveACL (Java class), [1] RetrieveACL(ProtocolStringList) (Java constructor) RetrieveAll (Java class) RetrieveAll(TransactionContainer, String) (Java constructor) RetrieveAllImpl (Java interface) RetrieveAllJob (Java class) RetrieveAllUncheckedFiles (Java class) RetrieveAllUncheckedFiles(long, String) (Java constructor) RetrieveAllUncheckedFilesImpl (Java interface) RetrieveContainer (Java class) RetrieveContainer(Subject, Long, String, HashMap) (Java constructor) RetrieveCurrentMaxId (Java class) RetrieveCurrentMaxIdImpl (Java interface) RetrieveDatatypes (Java class) RetrieveDatatypesImpl (Java interface) RetrieveEntity (Java class) RetrieveEntity() (Java constructor) RetrieveEntity(EntityID) (Java constructor) RetrieveEntity(EntityID, Role) (Java constructor) RetrieveEntity(EntityID, String) (Java constructor) RetrieveEntity(EntityID, String, String) (Java constructor) RetrieveEntity(String) (Java constructor) RetrieveEntity(String, Role) (Java constructor) RetrieveEntity(String, String) (Java constructor) RetrieveEntityACLImpl (Java interface) RetrieveEntityACLTransaction (Java class) RetrieveEntityACLTransaction(EntityID) (Java constructor) retrieveEntityParents (C++ function) RetrieveEntityResource (Java class) retrieveFromFileSystem() (Java method) retrieveFullEntitiesInContainer(Container) (Java method) retrieveFullEntity(EntityInterface, List) (Java method) RetrieveFullEntityTransaction (Java class) RetrieveFullEntityTransaction(Container, Subject) (Java constructor) RetrieveFullEntityTransaction(EntityID, Subject) (Java constructor) RetrieveFullEntityTransaction(EntityInterface, Subject) (Java constructor) retrieveOverrides (C++ function) RetrieveOwner (Java class) RetrieveParents (Java class) RetrieveParents(EntityInterface) (Java constructor) RetrieveParentsImpl (Java interface) RetrievePasswordValidator (Java class) RetrievePasswordValidator(String) (Java constructor) RetrievePasswordValidatorImpl (Java interface) RetrievePasswordValidatorTransaction (Java class) RetrievePasswordValidatorTransaction(String) (Java constructor) retrievePermissionRule(String) (Java method), [1] RetrievePermissionRules (Java class) RetrievePermissionRules(String) (Java constructor) RetrievePermissionRulesImpl (Java interface) RetrievePermissionRulesTransaction (Java class) RetrievePermissionRulesTransaction(String) (Java constructor) RetrieveProperties (Java class) RetrieveProperties(EntityInterface) (Java constructor) RetrievePropertiesImpl (Java interface) retrieveQueryTemplateDef (C++ function) RetrieveQueryTemplateDefinition (Java class) RetrieveQueryTemplateDefinition(EntityInterface) (Java constructor) RetrieveQueryTemplateDefinitionImpl (Java interface) RetrieveRole (Java class) RetrieveRole(String) (Java constructor) RetrieveRoleImpl (Java interface) RetrieveRoleTransaction (Java class) RetrieveRoleTransaction(String) (Java constructor) RetrieveRoleTransaction(String, Subject) (Java constructor) retrieveSingleRole(RetrieveSingleRoleRequest, StreamObserver) (Java method) retrieveSingleUser(RetrieveSingleUserRequest, StreamObserver) (Java method) RetrieveSparseEntity (Java class) RetrieveSparseEntity(EntityID, String) (Java constructor) RetrieveSparseEntity(EntityInterface) (Java constructor) RetrieveSparseEntity(SparseEntity) (Java constructor) RetrieveSparseEntityByPath (Java class) RetrieveSparseEntityByPath(String) (Java constructor) RetrieveSparseEntityImpl (Java interface) retrieveSubEntities(EntityInterface, List) (Java method) RetrieveUser (Java class) RetrieveUser(Principal) (Java constructor) RetrieveUserImpl (Java interface) RetrieveUserRolesTransaction (Java class) RetrieveUserRolesTransaction(String, String) (Java constructor) RetrieveUserTransaction (Java class) RetrieveUserTransaction(String, String) (Java constructor) RetrieveUserTransaction(String, String, Subject) (Java constructor) retrieveValidIDByName(String, String) (Java method) RetrieveVersionHistory (Java class) RetrieveVersionHistory(EntityInterface) (Java constructor) RetrieveVersionHistoryImpl (Java interface) RetrieveVersionInfo (Java class) RetrieveVersionInfo(EntityInterface) (Java constructor) RetriveAllNames (Java class) retry (Java field), [1] return_field_or_property() (in module caosadvancedtools.utils) reuse(EntityID) (Java method) revisionOf (caosadvancedtools.scifolder.withreadme.DataModel attribute) revoke_denial() (linkahead.common.models.ACL method) (linkahead.common.models.Entity method) revoke_grant() (linkahead.common.models.ACL method) (linkahead.common.models.Entity method) RIGHT_DELIMITER (Java field) ROCrateConverter (class in caoscrawler.converters.rocrate) ROCrateEntity (class in caoscrawler.structure_elements.rocrate_structure_elements) ROCrateEntityConverter (class in caoscrawler.converters.rocrate) Role (Java class), [1] (Java enum), [1] role (Java field) (linkahead.common.models.Entity property) ROLE_CANNOT_BE_DELETED (Java field) ROLE_DOES_NOT_EXIST (Java field) ROLE_NAME_IS_NOT_UNIQUE (Java field) ROLE_PARAMETER (Java field) RoleFilter (Java class) RoleFilter(Role, String, boolean) (Java constructor) RolePermission (Java class) RolePermission(String, String) (Java constructor) roles (Java field), [1] (linkahead.common.models.UserInfo attribute) RolesResource (Java class) ROLL_BACK (Java field) rollBack() (Java method), [1], [2] RollBackHandler (Java class) RolledBackException (Java class) RolledBackException(Throwable) (Java constructor) RootBenchmark (Java class) RowCFood (class in caosadvancedtools.cfood) RowType (class in caosadvancedtools.table_json_conversion.xlsx_utils) run() (in module caosadvancedtools.serverside.generic_analysis) (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17], [18], [19], [20], [21], [22], [23], [24], [25], [26], [27], [28], [29], [30], [31], [32], [33], [34], [35], [36], [37], [38], [39], [40], [41], [42], [43] run_server_side_script() (in module linkahead.utils.server_side_scripting) run_sql_commands() (caosadvancedtools.cache.AbstractCache method) runAs(PrincipalCollection) (Java method) runCheck() (in module linkahead.utils.checkFileSystemConsistency) runChownScript(File) (Java method) runJob(EntityInterface, Class) (Java method) runJob(ScheduledJob) (Java method) runJobFromSchedule(EntityInterface, Class) (Java method) runJobs(TransactionStage) (Java method) runtime (Java field)

S

s (Java field) safe_insert() (caosadvancedtools.guard.Guard method) safe_update() (caosadvancedtools.guard.Guard method) SafeLineLoader (class in caosadvancedtools.models.parser) salt (Java field) save_debug_data() (caoscrawler.crawl.Crawler method) save_form() (caosadvancedtools.crawler.Crawler static method) save_header() (in module caosadvancedtools.pandoc_header_tools) SCALAR (caosadvancedtools.table_json_conversion.xlsx_utils.ColumnType attribute) scan() (Java method) scan_directory() (in module caoscrawler.scanner) scan_structure_elements() (in module caoscrawler.scanner) scanner() (in module caoscrawler.scanner) Schedule (Java class) scheduleDaily() (Java method) ScheduledJob (Java class) ScheduledJob(Job) (Java constructor) scheduleJob(JobDetail, Trigger) (Java method) Schema ScriptingPermissions (Java class) ScriptingPermissions(String, String) (Java constructor) ScriptingResource (Java class) ScriptingResponse (class in linkahead.utils.server_side_scripting) ScriptingUtils (Java class) ScriptingUtils() (Java constructor) scripts (caosadvancedtools.scifolder.withreadme.DataModel attribute) second (Java field) seconds (Java field) SecurityMode (class in caoscrawler.crawl) SELECT (Java field) (linkahead.queries.QueryType attribute) select() (in module linkahead.queries) Selection (Java class) Selection(String) (Java constructor) SelfValidatingAuthenticationToken (Java class) SelfValidatingAuthenticationToken(Principal, long, long, String, String, String[], String[]) (Java constructor) SelfValidatingAuthenticationToken(Principal, long, String[], String[], Object) (Java constructor) SemiCompleteDateTime (Java class) SemiCompleteDateTime(Integer, Integer, Integer, Integer, Integer, Integer, Integer, TimeZone) (Java constructor) send() (Java method) send_email() (in module linkahead.utils.email) send_mail() (caosadvancedtools.crawler.Crawler static method) (in module caosadvancedtools.serverside.helper) SendEmailException sendHeaders(Metadata) (Java method) SendMailHandler (Java class) separated() (in module caosadvancedtools.crawler) SEPARATOR (Java field) serialize() (Java method) (linkahead.high_level_api.CaosDBPythonEntity method) serialize(EntityACL) (Java method) serialize(Properties) (Java method) serialize(ServerSideScriptingCaller) (Java method) serialize(T) (Java method) SerializeFieldStrategy (Java class) SerializeFieldStrategy() (Java constructor) SerializeFieldStrategy(List) (Java constructor) Serializer (Java interface) SERVER_PROPERTY_EXT_ENTITY_STATE (Java field) SERVER_SIDE_SCRIPT_DOES_NOT_EXIST (Java field) SERVER_SIDE_SCRIPT_ERROR (Java field) SERVER_SIDE_SCRIPT_MISSING_CALL (Java field) SERVER_SIDE_SCRIPT_NOT_EXECUTABLE (Java field) SERVER_SIDE_SCRIPT_SETUP_ERROR (Java field) SERVER_SIDE_SCRIPT_TIMEOUT (Java field) ServerConfigurationException ServerMessages (Java class) ServerProperties (Java class) ServerPropertiesResource (Java class) ServerPropertiesSerializer (Java class) ServerPropertiesSerializer() (Java constructor) ServerPropertiesSerializer(boolean) (Java constructor) ServerSideScriptingCaller (Java class) ServerSideScriptingCaller(String[], Integer, List, Object) (Java constructor) ServerSideScriptingCaller(String[], Integer, List, Object, Map) (Java constructor) ServerSideScriptingCaller(String[], Integer, List, Object, Map, ScriptingUtils) (Java constructor) ServerSideScriptingCaller(String[], Integer, List, Object, Map, ScriptingUtils, File) (Java constructor) ServerStat (Java interface) SESSION (Java field) SESSION_TIMEOUT_COOKIE (Java field) SESSION_TOKEN_COOKIE (Java field) SESSION_TOKEN_COOKIE_PREFIX_PATTERN (Java field) SESSION_TOKEN_COOKIE_PREFIX_PREDICATE (Java field) SessionToken (Java class) SessionToken(Principal, long, long, String, String, String[], String[]) (Java constructor) SessionToken(Principal, long, String[], String[]) (Java constructor) SessionTokenRealm (Java class) SessionTokenRealm() (Java constructor) set_cached() (built-in function) set_cached_value() (built-in function) SET_COOKIE (Java field) set_flag() (linkahead.common.models.Entity method) set_id_of_node() (caoscrawler.sync_graph.SyncGraph method) set_ids_and_datatype_of_parents_and_properties() (caoscrawler.crawl.Crawler static method) set_importance() (linkahead.common.models.PropertyList method) set_level() (caosadvancedtools.guard.Guard method) set_log_level() (in module caosadvancedtools.utils) set_parents() (caosadvancedtools.cfood.AbstractCFood static method) set_property() (caosadvancedtools.cfood.AbstractCFood static method) (linkahead.high_level_api.CaosDBPythonEntity method) set_required() (built-in function) set_server_property() (in module linkahead.common.administration) set_test_key() (in module linkahead.utils.register_tests) setAccess(Access) (Java method), [1] setAffiliation(Affiliation) (Java method) setAvailable(boolean) (Java method) setCharacterSet(CharacterSet) (Java method) setChecksum(String) (Java method) setCompleteHistory(boolean) (Java method) setCRID(String) (Java method) setCuid(String) (Java method), [1], [2] setDatatype(AbstractDatatype) (Java method), [1], [2] setDatatype(EntityInterface, Element) (Java method) setDatatype(String) (Java method), [1], [2] setDatatypeOverride(boolean) (Java method), [1], [2] setDate(Date) (Java method) setDate(Long) (Java method) setDate(String) (Java method), [1] setDate(UTCDateTime) (Java method) setDelegate(CacheHelper) (Java method) setDescription(String) (Java method), [1], [2] setDigest(Digest) (Java method) setDisposition(Disposition) (Java method) setDom(int) (Java method), [1] setDomain(EntityInterface) (Java method) setEmail(String) (Java method) setEncodings(List) (Java method) setEntity(EntityInterface) (Java method), [1] setEntity(EntityInterface, boolean) (Java method) setEntityACL(EntityACL) (Java method), [1], [2] setEntityACL(String) (Java method) setEntityStatus(EntityStatus) (Java method), [1], [2] setExpirationDate(Date) (Java method) setExpiresAfter(long) (Java method) setExpiresAfterSeconds(long) (Java method) setFailureSeverity(JobFailureSeverity) (Java method) setFields(Object[]) (Java method), [1], [2] setFile(File) (Java method) setFile(String) (Java method) SetFileCheckedTimestamp (Java class) SetFileCheckedTimestamp(EntityID, Long) (Java constructor) SetFileCheckedTimestampImpl (Java interface) SetFileChecksum (Java class) SetFileChecksum(EntityInterface) (Java constructor) SetFileChecksumImpl (Java interface) setFileProperties(FileProperties) (Java method), [1], [2] setFiles(HashMap) (Java method) setFlag(String, String) (Java method), [1], [2] setFlags(HashMap) (Java method) setFromAddr(String) (Java method) setFromName(String) (Java method) setHead(boolean) (Java method) setHelped(TransactionInterface) (Java method), [1], [2], [3] setHelper(String, DBHelper) (Java method), [1] setHour(int) (Java method), [1] setId(EntityID) (Java method), [1], [2], [3], [4] setId(String) (Java method), [1], [2] setImpl(Class, Class) (Java method) SetImpToFix (Java class) SetImpToRecByDefault (Java class) setIndex(int) (Java method) setIsName(boolean) (Java method) setLanguages(List) (Java method) setListener(ReadingListener) (Java method) setLocationRef(Reference) (Java method) setLocationRef(String) (Java method) setMap(Map) (Java method), [1], [2] setMaxReplays(int) (Java method) setMediaType(MediaType) (Java method) setMinute(int) (Java method), [1] setModificationDate(Date) (Java method) setMonth(int) (Java method), [1] setName(String) (Java method), [1], [2], [3], [4], [5], [6] setNanosecond(int) (Java method), [1] setNanoSecondFromFracionalString(String) (Java method), [1] setNanoseconds(String) (Java method), [1] setNoIdIsError(boolean) (Java method) setOnFinish(Runnable) (Java method) setOriginal(EntityInterface) (Java method) setOutput(OneTimeTokenToFile) (Java method) setPaging(int, int) (Java method) SetPassword (Java class) SetPassword(String, String) (Java constructor) SetPasswordImpl (Java interface) setPath(String) (Java method) SetPermissionRules (Java class) SetPermissionRules(String, Set) (Java constructor) SetPermissionRulesImpl (Java interface) setPermissions(String[]) (Java method) setPickupable(boolean) (Java method) setPIdx(int) (Java method) setPredecessors(List) (Java method) setProperties(PropertyContainer) (Java method), [1], [2] setProperty(String, String) (Java method), [1] setPurpose(String) (Java method) setQuery(Query) (Java method) SetQueryTemplateDefinition (Java class) SetQueryTemplateDefinition(EntityInterface) (Java constructor) setQueryTemplateDefinition(String) (Java method), [1], [2] SetQueryTemplateDefinitionImpl (Java interface) setRange(Range) (Java method) setRawOffset(int) (Java method) setRealm(String) (Java method) setReplacementId(EntityID) (Java method) setReplayTimeout(long) (Java method) setReplayTimeoutSeconds(long) (Java method) setRole(Role) (Java method), [1], [2] setRole(String) (Java method), [1], [2]

setRoles(String[]) (Java method) setSchedule(String) (Java method) setSecond(int) (Java method), [1] setSerializeFieldStrategy(SerializeFieldStrategy) (Java method), [1], [2] setSize(Long) (Java method) setSize(long) (Java method) setStage2Replacement(boolean) (Java method) setStatementStatus(StatementStatusInterface) (Java method), [1], [2] setStatementStatus(String) (Java method), [1], [2] setStatus(EntityStatus) (Java method) setSubject(String) (Java method) setSubProperty(SubProperty) (Java method), [1] setSubSelection(Selection) (Java method) setSuccessors(List) (Java method) setSystemDate(Date) (Java method) setSystemDate(java.util.Date) (Java method) setTag(Tag) (Java method) setTargetSetCount(int) (Java method) setTargetSetCount(Integer) (Java method) setTextData(String) (Java method) setThumbnail(File) (Java method) setTime(String) (Java method), [1] setTimeNS(String) (Java method), [1] setTimeZone(String) (Java method), [1] setTimeZoneOffset(int, int, int) (Java method), [1] setTmpIdentifier(String) (Java method) setToAddr(String) (Java method) setToElementStragegy(ToElementStrategy) (Java method), [1], [2] setToName(String) (Java method) setTransactionBenchmark(TransactionBenchmark) (Java method), [1], [2], [3] setTransient(boolean) (Java method) setUnit(Unit) (Java method), [1], [2] setup() (caoscrawler.converters.converters.Converter method) (caoscrawler.converters.rocrate.ROCrateConverter method) (caoscrawler.converters.zipfile_converter.ZipFileConverter method) setUp() (Java method) setUseCache(boolean) (Java method), [1] setUseCacheResourceDelegate(UseCacheResource) (Java method), [1], [2] setUsername(String) (Java method) setUTCSeconds(String) (Java method), [1] setValue(EntityInterface, Element, SerializeFieldStrategy) (Java method) setValue(String) (Java method) setValue(Value) (Java method), [1], [2] setVersion(Version) (Java method), [1], [2] setYear(int) (Java method), [1] SHA512 (Java class) sha512(String, String, int) (Java method) SharedFileResource (Java class) show_errors() (built-in function) show_record() (in module caosadvancedtools.serverside.utils) show_results() (built-in function) signature_from (Java field) signature_to (Java field) SimpleFileConverter (class in caoscrawler.converters.converters) SimpleMailFormatter (Java class) Simulation (caosadvancedtools.scifolder.withreadme.DataModel attribute) SimulationCFood (class in caosadvancedtools.scifolder.simulation_cfood) since (Java field) SinglePermissionSubject (Java class) SinglePermissionSubject(String) (Java constructor) SingleValue (Java interface) size (linkahead.common.models.Entity property) size() (Java method), [1] SIZE_TEST_FAILED (Java field) skip() (Java method) skip(long) (Java method), [1] skipJob() (Java method), [1], [2], [3], [4] SoftwareCFood (class in caosadvancedtools.scifolder.software_cfood) sort() (Java method), [1] sort_json() (in module linkahead.high_level_api) sourcecode (caosadvancedtools.scifolder.withreadme.DataModel attribute) sources (caosadvancedtools.scifolder.withreadme.DataModel attribute) SPARSE_FLAG (Java field) SparseEntity (Java class) sparseEntityToElement(Element, EntityInterface, SerializeFieldStrategy) (Java method) SPECIAL_ROLE_CANNOT_BE_DELETED (Java field) SPECIAL_ROLE_PERMISSIONS_CANNOT_BE_CHANGED() (Java method) special_treatment() (caosadvancedtools.cfoods.h5.H5CFood method) split() (in module caoscrawler.transformers.string_transformers) split_restricted_path() (in module caoscrawler.crawl) SplitTextConverter (class in caoscrawler.converters.transformer_converters) spss_to_datamodel_main() (in module caoscrawler.converters.spss) spss_to_yaml() (in module caoscrawler.converters.spss) SPSSConverter (class in caoscrawler.converters.spss) sRID (Java field) stackTraceElements (Java field) standard_type_for_high_level_type() (in module linkahead.high_level_api) start() (Java method), [1] start_crawling() (caoscrawler.crawl.Crawler method) STARTED (Java field) startIndex (Java field) startServer() (Java method) State (class in linkahead.common.state) (Java class) state (linkahead.common.models.Entity attribute) State(EntityInterface, EntityInterface) (Java constructor) STATE_ATTRIBUTE_DESCRIPTION (Java field) STATE_ATTRIBUTE_ID (Java field) STATE_ATTRIBUTE_MODEL (Java field) STATE_ATTRIBUTE_NAME (Java field) STATE_MODEL_NOT_FOUND (Java field) STATE_MODEL_NOT_SPECIFIED (Java field) STATE_MODEL_PARAMETER (Java field) STATE_MODEL_RECORD_TYPE_NAME (Java field) STATE_NOT_IN_STATE_MODEL (Java field) STATE_NOT_SPECIFIED (Java field) STATE_PERMISSIONS (Java field) STATE_RECORD_TYPE_NAME (Java field) STATE_XML_TAG (Java field) StatementStatus (Java enum) StatementStatusInterface (Java interface) StateModel (Java class) StateModel(EntityInterface) (Java constructor) StateModelPermission (Java class) StateModelPermission(String, String) (Java constructor) status (Java field), [1], [2], [3] (linkahead.connection.interface.CaosDBHTTPResponse property) (linkahead.connection.mockup.MockUpResponse property) STMT (Java field), [1] STMT_DELETE_ENTITY_PROPERTIES (Java field) STMT_DELETE_PERMISSION_RULES (Java field) STMT_DELETE_SPARSE_ENTITY (Java field) STMT_DELETE_USER_ROLES (Java field) STMT_ENTITY_WHERE_CLAUSE (Java field) STMT_GET_ALL_HEAD (Java field) STMT_GET_ALL_NAMES (Java field) STMT_GET_DEPENDENT_ENTITIES (Java field) STMT_GET_ID_BY_NAME (Java field) STMT_GET_ID_BY_PATH (Java field) STMT_GET_INFO (Java field) STMT_INSERT_ENTITY_COLLECTION (Java field) STMT_INSERT_ENTITY_DATATYPE (Java field) STMT_INSERT_ENTITY_PROPERTY (Java field) STMT_INSERT_FILE_PROPERTIES (Java field) STMT_INSERT_ISA (Java field) STMT_INSERT_LIN_CON (Java field) STMT_INSERT_PERMISSION_RULES (Java field) STMT_INSERT_QUERY_TEMPLATE_DEF (Java field) STMT_INSERT_ROLE (Java field) STMT_INSERT_SPARSE_ENTITY (Java field) STMT_INSERT_USER_ROLES (Java field) STMT_IS_SUBTYPE (Java field) STMT_LIST_ROLES (Java field) STMT_LIST_USERS (Java field) STMT_LOG_TRANSACTION (Java field) STMT_OTHER_ROLES (Java field) STMT_REGISTER_SUBDOMAIN (Java field) STMT_RETRIEVE_QUERY_TEMPLATE_DEF (Java field) STMT_RETRIEVE_ROLE (Java field) STMT_RETRIEVE_USER_ACCOUNT (Java field) STMT_RETRIEVE_USER_ROLES (Java field) STMT_RETRIEVE_USERS (Java field) STMT_SELECT_PERMISSION_RULES (Java field) STMT_SET_CHECKSUM (Java field) STMT_SET_TS (Java field) STMT_UPDATE_ENTITY (Java field) STMT_UPDATE_FILE_PROPS (Java field) Store (class in caoscrawler.stores) store() (in module caosadvancedtools.collect_datamodel) store_state() (caoscrawler.identifiable_adapters.LocalStorageIdentifiableAdapter method) StoredAt (Java class) StoredAt(String) (Java constructor) storeFile() (Java method) str (Java field) str2xml() (built-in function) str_to_bool() (in module caoscrawler.converters.converters) Strict (Java class) String2InputStream(String) (Java method) string_in_list() (in module caosadvancedtools.table_importer) string_to_person() (in module caosadvancedtools.utils) StringIds (Java class) StringIds(Transaction) (Java constructor) strip() (in module caosadvancedtools.tools.strip_null_from_list) (in module caoscrawler.transformers.string_transformers) StructureElement (class in caoscrawler.structure_elements.structure_elements) SubBenchmark (Java class) SubBenchmark(String) (Java constructor) subBenchmarks (Java field) SUBJECT_KEY (Java field) submatch() (in module caoscrawler.transformers.substitution_transformers) subProperties (Java field) SubProperty (Java class) SubProperty(EntityFilterInterface) (Java constructor) substitute() (in module caoscrawler.macros.macro_yaml_object) substitute_dict() (in module caoscrawler.macros.macro_yaml_object) substitute_on_match() (in module caoscrawler.transformers.substitution_transformers) substitute_with_dict() (in module caoscrawler.transformers.substitution_transformers) SUBTYPING (Java field) successors (linkahead.common.versioning.Version attribute) SUGGESTED (Java field), [1] supports(AuthenticationToken) (Java method) SuppressKnown (class in caosadvancedtools.suppressKnown) sync() (linkahead.common.models.Info method) sync_data_model() (caosadvancedtools.models.data_model.DataModel method) SYNC_DATABASE_EVENT (Java field) sync_global_acl() (in module linkahead.common.models) sync_ids_by_name() (caosadvancedtools.models.data_model.DataModel method) syncDatabase() (Java method) syncDatabase(ServerStat) (Java method) SyncGraph (class in caoscrawler.sync_graph) synchronize() (caoscrawler.crawl.Crawler method) SyncNode (class in caoscrawler.sync_node) SyncStats (Java class) SyncStats(ServerStat) (Java constructor) SyncStatsImpl (Java interface) syntaxError(Recognizer, Object, int, int, String, RecognitionException) (Java method) SYSTEM_SUPPORTS_LEAP_SECONDS (Java field) SystemMillisToUTCDateTime(Long) (Java method)

T

Table (Java enum) table (Java field) table_re (caosadvancedtools.scifolder.result_table_cfood.ResultTableCFood attribute) TableConverter (class in caoscrawler.converters.converters) TableCrawler (class in caosadvancedtools.crawler) TableExportError TableImporter (class in caosadvancedtools.table_importer) TableTemplateGenerator (class in caosadvancedtools.table_json_conversion.table_generator) tag_msg() (caosadvancedtools.suppressKnown.SuppressKnown method) tagName (Java field) TARGET_PATH_EXISTS (Java field) TARGET_PATH_NOT_ALLOWED (Java field) TempID (class in caoscrawler.sync_node) TemplateFiller (class in caosadvancedtools.table_json_conversion.fill_xlsx) TemplateFiller.Context (class in caosadvancedtools.table_json_conversion.fill_xlsx) TestCase (Java enum) testChownScript() (Java method) TestMail (Java class) text_data (Java field) TextDatatype (Java class) TextElement (class in caoscrawler.structure_elements.structure_elements) TextElementConverter (class in caoscrawler.converters.converters) thumbnail (linkahead.common.models.Entity property) THUMBNAIL_HAS_NOT_BEEN_UPLOAED (Java field) ThumbnailsResource (Java class) time_zone (linkahead.common.models.Info attribute), [1] timeout (Java field) timeout() (Java method) TimeoutException (Java class) TimeoutException(String) (Java constructor) TimeoutProcess (Java class) TimeoutProcess(Process, int) (Java constructor) Timer (Java class) Timer(long) (Java constructor) timeSinceSync() (Java method) TimeZone (class in linkahead.common.timezone) timeZone (Java field) tmpDir (Java field) to_dict() (caosadvancedtools.table_json_conversion.convert.XLSXConverter method) (in module caosadvancedtools.table_json_conversion.convert) to_graphics() (in module linkahead.utils.plantuml) to_state (linkahead.common.state.Transition property) TO_STATE_PROPERTY_NAME (Java field) to_table() (in module caosadvancedtools.table_converter) to_tsv() (in module caosadvancedtools.table_converter) to_xml() (linkahead.common.models.ACL method) (linkahead.common.models.Container method) (linkahead.common.models.Entity method) (linkahead.common.models.File method) (linkahead.common.models.Message method) (linkahead.common.models.Messages method) (linkahead.common.models.Parent method) (linkahead.common.models.ParentList method) (linkahead.common.models.Property method) (linkahead.common.models.PropertyList method) (linkahead.common.models.QueryTemplate method) (linkahead.common.models.Record method) (linkahead.common.models.RecordType method) (linkahead.common.state.State method) (linkahead.common.versioning.Version method) TO_XML_TAG (Java field) toDatabaseString() (Java method), [1], [2], [3], [4], [5], [6], [7] toDateTimeString(TimeZone) (Java method), [1], [2], [3], [4], [5] TODAY (Java field) today() (Java method) toDotNotation(TimeZone) (Java method), [1], [2] toElement() (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17], [18], [19], [20], [21], [22], [23], [24], [25], [26] toElement(boolean) (Java method) toElement(EntityInterface, SerializeFieldStrategy) (Java method), [1], [2], [3], [4] toElement(Version) (Java method) ToElementable (Java interface) ToElementStrategy (Java interface) ToFileHandler (Java class) ToFileHandler() (Java constructor) toFileProperties(String) (Java method) toggle_submit_button_form_valid() (built-in function) toHex(byte[]) (Java method) toInteger() (Java method)

toJSON(EntityACL) (Java method) toLong() (Java method) toMap() (Java method) toString() (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17], [18], [19], [20], [21], [22], [23], [24], [25], [26], [27], [28], [29], [30], [31], [32], [33], [34], [35], [36], [37], [38], [39], [40], [41], [42], [43] toString(Role) (Java method) toString(String) (Java method), [1], [2], [3], [4] toString(String, Role) (Java method) toString(String, String) (Java method) toStringArray(Object[]) (Java method) toStringBuilder() (Java method) touch() (Java method) touchedTimestamp (Java field) Transaction (Java class) TRANSACTION (Java field) transaction() (Java method), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17], [18], [19], [20], [21], [22] Transaction(C) (Java constructor) Transaction(C, Observer) (Java constructor) transaction(MultiTransactionRequest) (Java method) TRANSACTION_PERMISSIONS (Java field) TRANSACTION_ROLL_BACK (Java field) TransactionAccess (Java class) TransactionAccess(TransactionInterface, Releasable) (Java constructor) TransactionBenchmark (Java class) TransactionBenchmark() (Java constructor) TransactionContainer (Java class) TransactionContainer() (Java constructor) TransactionContainer(Subject, Long, String) (Java constructor) TransactionContainer(Subject, Long, String, HashMap) (Java constructor) TransactionEntity (Java interface) TransactionError TransactionException (Java class) TransactionException(String) (Java constructor) TransactionException(String, Exception) (Java constructor) TransactionException(Throwable) (Java constructor) TransactionFilter (Java class) TransactionFilter(String, Transactor, String, String) (Java constructor) TransactionInterface (Java interface) TransactionLogMessage (Java class) TransactionLogMessage(String, EntityInterface, String, UTCDateTime) (Java constructor) TransactionPermission (Java class) TransactionPermission(String, String) (Java constructor) TransactionStage (Java enum) Transactor (Java class) TransformTextConverter (class in caoscrawler.converters.transformer_converters) transformToDeepPropertyTree(List, boolean) (Java method) Transition (class in linkahead.common.state) (Java class) Transition(EntityInterface) (Java constructor) TRANSITION_ATTRIBUTE_DESCRIPTION (Java field) TRANSITION_ATTRIBUTE_NAME (Java field) TRANSITION_PARAMETER (Java field) TRANSITION_RECORD_TYPE_NAME (Java field) TRANSITION_XML_TAG (Java field) TransitionPermission (Java class) TransitionPermission(String, String) (Java constructor) transitions (linkahead.common.state.State property) TSVImporter (class in caosadvancedtools.table_importer) TwiceDefinedException Type (Java enum) type (Java field), [1] type_id (Java field) TYPE_LIKE (Java field) type_name (Java field) TYPE_NORMAL (Java field) TYPE_REGEXP (Java field) typecheck() (caoscrawler.converters.converters.Converter method) (caoscrawler.converters.converters.DictElementConverter method) (caoscrawler.converters.converters.DirectoryConverter method) (caoscrawler.converters.converters.ListElementConverter method) (caoscrawler.converters.converters.SimpleFileConverter method) (caoscrawler.converters.converters.TableConverter method) (caoscrawler.converters.hdf5_converter.H5DatasetConverter method) (caoscrawler.converters.hdf5_converter.H5GroupConverter method) (caoscrawler.converters.hdf5_converter.H5NdarrayConverter method) (caoscrawler.converters.rocrate.ROCrateConverter method) (caoscrawler.converters.rocrate.ROCrateEntityConverter method) (caoscrawler.converters.xml_converter.XMLAttributeNodeConverter method) (caoscrawler.converters.xml_converter.XMLTagConverter method) (caoscrawler.converters.xml_converter.XMLTextNodeConverter method)

U

Unauthenticated (class in linkahead.connection.authentication.unauthenticated) UNAUTHENTICATED (Java field) unauthenticated(Request, Response) (Java method) unauthorized(Request, Response) (Java method) unblock() (Java method) unchecked_contains_circular_dependency() (caoscrawler.sync_graph.SyncGraph method) UncloseableOutputStream (Java class) UncloseableOutputStream(OutputStream) (Java constructor) undo() (Java method), [1], [2], [3] Undoable (Java interface) UndoHandler (Java class) UniqueName (Java class) UniqueNamesError UNIT (Java field) Unit (Java interface) unit (linkahead.common.models.Entity property) (linkahead.high_level_api.CaosDBPropertyMetaData attribute) UnixFileSystemCheckHash (Java class) UnixFileSystemCheckHash(Access) (Java constructor) UnixFileSystemCheckSize (Java class) UnixFileSystemCheckSize(Access) (Java constructor) UnixFileSystemFileExists (Java class) UnixFileSystemFileExists(Access) (Java constructor) UnixFileSystemFileWasModifiedAfter (Java class) UnixFileSystemFileWasModifiedAfter(Access) (Java constructor) UnixFileSystemGetFileIterator (Java class) UnixFileSystemGetFileIterator(Access) (Java constructor) UnixFileSystemHelper (Java class) UnixFileSystemHelper(String) (Java constructor) UnixFileSystemTransaction (Java class) UnixFileSystemTransaction(Access) (Java constructor) UNKNOWN_DATATYPE (Java field) UNKNOWN_ERROR(String) (Java method) UNKNOWN_ERROR(String, String) (Java method) UNKNOWN_FILE (Java field), [1] UNKNOWN_IMPORTANCE (Java field) UNKNOWN_UNIT (Java field) UnknownUnit (Java class) UnknownUnit(de.timmfitschen.easyunits.Unit) (Java constructor) unlink(File) (Java method) unlock() (Java method) unpause() (Java method) UNQUALIFIED (Java field) UnqualifiedParentsError UnqualifiedPropertiesError UNVERSIONED (Java field) UPDATE (caoscrawler.crawl.SecurityMode attribute) (Java field), [1] update() (caoscrawler.stores.Store method) (caoscrawler.sync_node.SyncNode method) (linkahead.common.models.Container method) (linkahead.common.models.Entity method) (linkahead.common.models.QueryTemplate method) update(ServerStat) (Java method), [1] update(String, ServerStat) (Java method), [1] update_acl() (linkahead.common.models.Entity method) UPDATE_ADD_FILE (Java field) UPDATE_ADD_PARENT (Java field) UPDATE_ADD_PROPERTY (Java field) update_authorized_changes() (caosadvancedtools.crawler.Crawler static method) UPDATE_DATA_TYPE (Java field) UPDATE_DESCRIPTION (Java field) update_identifiables() (caosadvancedtools.cfood.AbstractCFood method) (caosadvancedtools.cfood.RowCFood method) (caosadvancedtools.cfoods.h5.H5CFood method) (caosadvancedtools.example_cfood.ExampleCFood method) (caosadvancedtools.scifolder.analysis_cfood.AnalysisCFood method) (caosadvancedtools.scifolder.experiment_cfood.ExperimentCFood method) (caosadvancedtools.scifolder.publication_cfood.PublicationCFood method) (caosadvancedtools.scifolder.result_table_cfood.ResultTableCFood method) (caosadvancedtools.scifolder.simulation_cfood.SimulationCFood method) (caosadvancedtools.scifolder.software_cfood.SoftwareCFood method) update_ids_from_cache() (caosadvancedtools.cache.IdentifiableCache method) update_matched_entity() (in module caosadvancedtools.structure_mapping) UPDATE_MOVE_FILE (Java field) UPDATE_NAME (Java field) UPDATE_QUERY_TEMPLATE_DEFINITION (Java field) UPDATE_REMOVE_FILE (Java field) UPDATE_REMOVE_PARENT (Java field) UPDATE_REMOVE_PROPERTY (Java field) UPDATE_ROLE (Java field) update_structure() (in module caosadvancedtools.structure_mapping) UPDATE_VALUE (Java field) UpdateACL (Java class) UpdateACL(TransactionContainer) (Java constructor)

UpdateCache (class in caosadvancedtools.cache) updateEntity (C++ function) UpdateEntity (Java class) UpdateEntity() (Java constructor) UpdateEntity(Element) (Java constructor) UpdateEntity(Element, Role) (Java constructor) UpdateEntity(EntityID) (Java constructor) UpdateEntity(EntityID, Role) (Java constructor) UpdateEntityTransaction (Java class) UpdateEntityTransaction(TransactionContainer) (Java constructor) updateEnvironment() (Java method) updatePermissionRules(String, Set) (Java method), [1] UpdatePermissionRulesTransaction (Java class) UpdatePermissionRulesTransaction(String, Set) (Java constructor) UpdateRoleTransaction (Java class) UpdateRoleTransaction(Role) (Java constructor) updateSingleRole(UpdateSingleRoleRequest, StreamObserver) (Java method) updateSingleUser(UpdateSingleUserRequest, StreamObserver) (Java method) UpdateSparseEntity (Java class) UpdateSparseEntity(EntityInterface) (Java constructor) UpdateSparseEntityImpl (Java interface) UpdateUnitConverters (Java class) UpdateUser (Java class) UpdateUser(ProtoUser) (Java constructor) UpdateUserImpl (Java interface) UpdateUserRoles (Java class) UpdateUserRoles(String, String, Set) (Java constructor) updateUserRoles(String, String, Set) (Java method), [1] UpdateUserRolesImpl (Java interface) UpdateUserRolesTransaction (Java class) UpdateUserRolesTransaction(String, String, HashSet) (Java constructor) UpdateUserTransaction (Java class) UpdateUserTransaction(ProtoUser, String) (Java constructor) UpdateUserTransaction(String, String, UserStatus, String, String, String) (Java constructor) upload(FileItemStream, String) (Java method) upload(String, ByteString) (Java method) UPLOAD_FILES_DIR (Java field) UploadBuffer (Java class) UploadBuffer(File) (Java constructor) uploadChunk(String, FileChunk) (Java method) upper() (in module caoscrawler.transformers.string_transformers) URI() (built-in function) URLDecodeWithUTF8(String) (Java method) urlencode() (in module linkahead.connection.utils) URLEncodeWithUTF8(String) (Java method) USE_AS_DATA_TYPE (Java field) USE_AS_PARENT (Java field) USE_AS_PROPERTY (Java field) USE_AS_REFERENCE (Java field) use_parameter() (linkahead.high_level_api.CaosDBPythonEntity method) useCache() (Java method), [1], [2], [3], [4] UseCacheResource (Java interface) UseCacheResourceDelegate (Java class) useDaylightTime() (Java method) USER_HAS_BEEN_ACTIVATED (Java field) user_info (linkahead.common.models.Info attribute), [1] USER_PARAMETER (Java field) UserInfo (class in linkahead.common.models) username (Java field), [1] (linkahead.common.versioning.Version attribute) (linkahead.connection.authentication.input.InputCredentialsProvider attribute) (linkahead.connection.authentication.input.InputCredentialsProvider property) (linkahead.connection.authentication.interface.CredentialsProvider attribute) (linkahead.connection.authentication.interface.CredentialsProvider property) (linkahead.connection.authentication.keyring.KeyringCaller attribute) (linkahead.connection.authentication.pass.PassCaller attribute) (linkahead.connection.authentication.plain.PlainTextCredentialsProvider attribute) (linkahead.connection.authentication.plain.PlainTextCredentialsProvider property) USERNAME_PASSWORD_AUTHENTICATION (Java field) UserPermission (Java class) UserPermission(String, String) (Java constructor) UserResource (Java class) UserRolesResource (Java class) users (Java field), [1] UserSource (Java interface) UserSources (Java class) UserStatus (Java enum) UTCDateTime (Java class) UTCDateTime(Integer, Integer, Integer, Integer, Integer, Integer, Integer, TimeZone) (Java constructor) UTCDateTime(Integer, Integer, Integer, Integer, Integer, Integer, Integer, TimeZone, boolean) (Java constructor) UTCSeconds(Long, Integer) (Java method) UTCTimeZoneShift (Java class) UTCTimeZoneShift(int, int, int) (Java constructor) Utils (Java class), [1] uuid() (in module linkahead.common.utils)

V

VALID (Java field) validate() (in module caoscrawler.validator) validate_against_json_schema() (in module caoscrawler.converters.converters) validate_cache() (caosadvancedtools.cache.IdentifiableCache method) validate_yaml_schema() (in module linkahead.configuration) validateBuildNumber() (Java method) value (Java field), [1], [2] Value (Java interface) value (linkahead.common.models.Entity property) value_matches_versionid() (in module linkahead.common.models) valueOf(boolean) (Java method) valueOf(Calendar) (Java method) valueOf(String) (Java method), [1], [2], [3] valueOf(String, TimeZone) (Java method) values (caoscrawler.exceptions.ImpossibleMergeError attribute) values() (Java method) Version (class in linkahead.common.versioning) (Java class)

version (Java field) (linkahead.common.models.Entity property) (linkahead.high_level_api.CaosDBPythonEntity property) Version() (Java constructor) Version(String) (Java constructor) Version(String, long, int) (Java constructor) Version(String, UTCDateTime) (Java constructor) Version(String, UTCDateTime, String, String) (Java constructor) VERSION_HISTORY_STMT (Java field) VersionFilter (Java class) VersionHistoryItem (Java class) versionId (Java field) VersionTransaction (Java class) VersionTransaction(EntityInterface) (Java constructor) VersionXMLSerializer (Java class) VerySparseEntity (Java class) Vocabulary

W

waitFor() (Java method) waitingAquireAccess() (Java method) WARN (Java field) Warning (Java field) warning(Message) (Java method) WARNING_OCCURED (Java field) was_tagged() (caosadvancedtools.suppressKnown.SuppressKnown method) wasTimeouted() (Java method) watchTimeout(TimeoutProcess, int) (Java method) Webinterface (Java class) WebinterfaceBuildNumber (Java class) WebinterfaceUtils (Java class) WebinterfaceUtils(Reference) (Java constructor) WebinterfaceUtils(String) (Java constructor) WebinterfaceUtils(String, String, String, String, String) (Java constructor) WebUI_Formatter (class in caosadvancedtools.webui_formatter) whoHasReservedAccess() (Java method) whoHasReservedWriteAccess() (Java method) win_path_converter() (in module caosadvancedtools.table_importer) win_path_list_converter() (in module caosadvancedtools.table_importer) win_paths (caosadvancedtools.scifolder.analysis_cfood.AnalysisCFood attribute) (caosadvancedtools.scifolder.experiment_cfood.ExperimentCFood attribute) (caosadvancedtools.scifolder.publication_cfood.PublicationCFood attribute) (caosadvancedtools.scifolder.result_table_cfood.ResultTableCFood attribute) (caosadvancedtools.scifolder.simulation_cfood.SimulationCFood attribute) (caosadvancedtools.scifolder.software_cfood.SoftwareCFood attribute) WithREADME (class in caosadvancedtools.scifolder.withreadme)

workbook (caosadvancedtools.table_json_conversion.fill_xlsx.TemplateFiller property) wrap_bootstrap_alert() (in module caosadvancedtools.serverside.helper) WrappedConverter (Java class) WrappedConverter(de.timmfitschen.easyunits.conversion.Converter) (Java constructor) WrappedLinearConverter (Java class) WrappedLinearConverter(de.timmfitschen.easyunits.conversion.LinearConverter) (Java constructor) WrappedUnit (Java class) WrappedUnit(de.timmfitschen.easyunits.Unit) (Java constructor) WritableContainer (Java class) WritableContainer() (Java constructor) WritableContainer(Subject, Long, String, HashMap) (Java constructor) WritableEntity (Java class) WritableEntity(Element) (Java constructor) WritableEntity(Element, Role) (Java constructor) WritableEntity(EntityID, Role) (Java constructor) WritableEntity(String, Role) (Java constructor) write(ByteString) (Java method) write(int) (Java method) write(OutputStream) (Java method), [1] write(WritableByteChannel) (Java method) write(Writer) (Java method), [1] WriteAccessLock (Java class) WriteAccessLock(ReadAccessSemaphore) (Java constructor) WriteEntity (Java interface) writersBlock (Java field) WriteTransaction (Java class) WriteTransaction(WritableContainer) (Java constructor) WriteTransactionInterface (Java interface)

X

XLSImporter (class in caosadvancedtools.table_importer) XLSXConverter (class in caosadvancedtools.table_json_conversion.convert) XLSXTableConverter (class in caoscrawler.converters.converters) XLSXTemplateGenerator (class in caosadvancedtools.table_json_conversion.table_generator) xml2str() (built-in function) (in module linkahead.common.utils) xmlAppendTo(Element) (Java method) XMLAttributeNode (class in caoscrawler.structure_elements.structure_elements) XMLAttributeNodeConverter (class in caoscrawler.converters.xml_converter)

XMLFileConverter (class in caoscrawler.converters.xml_converter) xmlNotWellFormedException (Java class) XMLParser (Java class) XMLParser() (Java constructor) XMLTagConverter (class in caoscrawler.converters.xml_converter) XMLTagElement (class in caoscrawler.structure_elements.structure_elements) XMLTextNode (class in caoscrawler.structure_elements.structure_elements) XMLTextNodeConverter (class in caoscrawler.converters.xml_converter) xslt() (built-in function)

Y

yaml_file_to_xml() (in module linkahead.yamlapi) yaml_to_xml() (in module linkahead.yamlapi) YamlDefinitionError

YAMLFileConverter (class in caoscrawler.converters.converters) year (Java field) yes_no_converter() (in module caosadvancedtools.table_importer)

Z

ZipFileConverter (class in caoscrawler.converters.zipfile_converter)

zone_id (linkahead.common.timezone.TimeZone attribute)